PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.31.53.1
Common NameCHLNCDRAFT_16757
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C3H
Protein Properties Length: 109aa    MW: 12788.6 Da    PI: 8.4957
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.31.53.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.71.3e-105071426
                 ---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                 ++C++f++ GtCk+Gd C++aHg
  gw1.31.53.1 50 VPCPDFRK-GTCKRGDACTYAHG 71
                 69******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.51E-54575IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.8784673IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-64672IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-85071IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.9E-65173IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-578108IPR000571Zinc finger, CCCH-type
SMARTSM00356381104IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 109 aa     Download sequence    Send to blast
YSTDAFRMFS FKIDCCPRLA ESHDWTLCPF QHPGEKARRR DPRCYTYHGV PCPDFRKGTC  60
KRGDACTYAH GVFECWLHPS RYRTQLCKEG AACRRSVCFF AHSVEQLRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005843420.11e-76hypothetical protein CHLNCDRAFT_16757, partial
SwissprotP937556e-54C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
SwissprotQ9LXV45e-54C3H56_ARATH; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2P6VMS12e-71A0A2P6VMS1_9CHLO; Zinc finger CCCH domain-containing 66-like
TrEMBLE1ZS363e-75E1ZS36_CHLVA; Uncharacterized protein (Fragment)
STRINGXP_005843420.15e-76(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP601532
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.12e-56CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]