PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.4.1151.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family NF-YB
Protein Properties Length: 134aa    MW: 14798.8 Da    PI: 4.6099
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.4.1151.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB452.6e-14699895
         NF-YB  8 lPianvsrimkkvlPana......kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95
                  lP a +++++ ++l a        ++s +++++v ec  efi  v++ea++ + +e + ti+++ +l al  lGf+ y ++ ++   + +e e+
  gw1.4.1151.1  6 LPKATIAKMIAEALSASMgsgaslRMSPECRDMVVECCQEFIHAVSAEANEVSTKELKSTITAEHVLAALRRLGFDAYEAECEIARDEAKEEET 99
                  7888888888888875421222337999**************************************************9887776666666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.68E-282132IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.3E-292132IPR009072Histone-fold
PfamPF008081.7E-11675IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
DDELGLPKAT IAKMIAEALS ASMGSGASLR MSPECRDMVV ECCQEFIHAV SAEANEVSTK  60
ELKSTITAEH VLAALRRLGF DAYEAECEIA RDEAKEEETE KRELKKKRKT TQMSEEDAIA  120
MQQELFARAA ARMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_B2e-26112911132Transcription Regulator NC2 beta chain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003079045.15e-54Histone-fold
TrEMBLA0A454XXJ21e-52A0A454XXJ2_OSTTA; Histone-fold-containing protein
TrEMBLQ01A731e-52Q01A73_OSTTA; Histone-fold
STRINGQ01A732e-53(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP24221515
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23090.46e-22nuclear factor Y, subunit B13