PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

gw1.4.415.1

Common Name

CHLNCDRAFT_14485

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 128aa MW: 14306.1 Da PI: 5.6218

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gw1.4.415.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	52.8	1e-16	3	88	5	89
NF-YB 5 drflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfe.dyveplkvylkk 89 d lP + v++ +k+ +P++ +i+ da e++ +c +f+ +v+++a+d ++rekr ti+++ ++ al +l f +y+e++k+ l + gw1.4.415.1 3 DVGLPRTTVQKSIKELMPKEMRIAGDASELLVQCCNQFVHLVSTQANDISEREKRSTISPEHVVKALEELEFGpQYLEAVKAGLDN 88 6679999***************************************************************658**9988754 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	5.74E-26	2	124	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	9.4E-32	2	125	IPR009072	Histone-fold
Pfam	PF00808	1.1E-14	6	69	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
QDDVGLPRTT VQKSIKELMP KEMRIAGDAS ELLVQCCNQF VHLVSTQAND ISEREKRSTI 60 SPEHVVKALE ELEFGPQYLE AVKAGLDNKE HREHKAGHKK GDSGLTQEQL IELQQKLFEE 120 ARAATLSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	1e-28	2	122	12	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005850388.1	5e-90	hypothetical protein CHLNCDRAFT_14485, partial
TrEMBL	E1Z861	1e-88	E1Z861_CHLVA; Uncharacterized protein (Fragment)
STRING	XP_005850388.1	2e-89	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP2422	15	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	5e-31	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Entrez Gene	17357393

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]