PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.4.828.1
Common NameCOCSUDRAFT_9603
Organism
Coccomyxa subellipsoidea C-169
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Trebouxiophyceae incertae sedis; Coccomyxaceae; Coccomyxa; Coccomyxa subellipsoidea
Family MYB
Protein Properties Length: 102aa    MW: 12062.6 Da    PI: 10.5493
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.4.828.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.9e-18247147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W ++Ed++l+++vk  G g+W++Iar+++ gR +kqc++rw++ 
      gw1.4.828.1  2 KGNWLADEDDRLKQLVKTEGEGQWSAIARHFP-GRIGKQCRERWHNQ 47
                     79******************************.************96 PP
2Myb_DNA-binding52.61.1e-165496145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     r +WT eE+ +l++a+++ G++ W+ Ia+ +  gRt++ +k++w+
      gw1.4.828.1 54 REAWTDEEETILIEAHRRVGNK-WADIAKVIT-GRTENAVKNHWN 96
                     789*******************.********9.***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.2E-14150IPR001005SANT/Myb domain
PROSITE profilePS5129428.132152IPR017930Myb domain
PfamPF002493.3E-16248IPR001005SANT/Myb domain
SuperFamilySSF466892.14E-28295IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-26355IPR009057Homeodomain-like
CDDcd001674.39E-11446No hitNo description
SMARTSM007171.2E-1453101IPR001005SANT/Myb domain
PROSITE profilePS5129420.61153102IPR017930Myb domain
PfamPF002492.5E-155496IPR001005SANT/Myb domain
CDDcd001673.76E-95699No hitNo description
Gene3DG3DSA:1.10.10.605.8E-2156101IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
VKGNWLADED DRLKQLVKTE GEGQWSAIAR HFPGRIGKQC RERWHNQLRP DIKREAWTDE  60
EETILIEAHR RVGNKWADIA KVITGRTENA VKNHWNATLR RR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-4211023104MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-4311023104C-Myb DNA-Binding Domain
1msf_C9e-4311023104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility (PubMed:23057675, PubMed:24068955). Acts redundantly with MYB119 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5 (PubMed:24068955). {ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:24068955}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005649650.11e-68Homeodomain-like protein, partial
SwissprotQ9FY603e-42MYB64_ARATH; Transcription factor MYB64
TrEMBLI0Z3873e-67I0Z387_COCSC; Homeodomain-like protein (Fragment)
STRINGXP_005649650.14e-68(Coccomyxa subellipsoidea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.11e-44myb domain protein 64
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Blanc G, et al.
    The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation.
    Genome Biol., 2012. 13(5): p. R39
    [PMID:22630137]