PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.5.1139.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family MYB
Protein Properties Length: 97aa    MW: 11396.1 Da    PI: 10.8288
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.5.1139.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.32.1e-14144448
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     WT  Ed l  d+vkq+G++ W+ Ia+++  g+t kq+  rw++yl
     gw1.5.1139.1  1 WTHAEDALVRDLVKQHGPKKWAVIAERLS-GKTQKQVYARWRDYL 44
                     *****************************.*************97 PP
2Myb_DNA-binding31.73.5e-105292345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     +W + E+e l++  +  G+  W+  ar m+ gR+++ +k++++
     gw1.5.1139.1 52 AWEPFEEEHLIQIQEVIGNQ-WAVLARLMP-GRSPNAIKNKFH 92
                     79999*************99.*********.**********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.9E-8146IPR001005SANT/Myb domain
PfamPF002494.7E-13144IPR001005SANT/Myb domain
CDDcd001677.90E-11144No hitNo description
Gene3DG3DSA:1.10.10.603.3E-19151IPR009057Homeodomain-like
SuperFamilySSF466894.49E-23191IPR009057Homeodomain-like
PROSITE profilePS5129422.999148IPR017930Myb domain
SMARTSM007171.7E-44997IPR001005SANT/Myb domain
PROSITE profilePS512949.4754997IPR017930Myb domain
PfamPF002491.5E-85192IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-145294IPR009057Homeodomain-like
CDDcd001673.77E-45292No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
WTHAEDALVR DLVKQHGPKK WAVIAERLSG KTQKQVYARW RDYLQPGLTT RAWEPFEEEH  60
LIQIQEVIGN QWAVLARLMP GRSPNAIKNK FHATRRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-231977103MYB PROTO-ONCOGENE PROTEIN
1h88_C8e-2319761157MYB PROTO-ONCOGENE PROTEIN
1h89_C8e-2319761157MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-231977103C-Myb DNA-Binding Domain
1msf_C2e-231977103C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003079224.11e-55SANT/Myb domain
TrEMBLA0A1Y5IIV03e-54A0A1Y5IIV0_OSTTA; Myb family transcription factor-like protein
TrEMBLQ019P33e-54Q019P3_OSTTA; SANT/Myb domain
STRINGQ019P35e-55(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1516114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.28e-27Homeodomain-like protein