PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.5.634.1
Common NameCHLNCDRAFT_17292
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C2H2
Protein Properties Length: 268aa    MW: 28788.6 Da    PI: 8.1903
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.5.634.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05246268223
                  EETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                  +Cp+Cg+ F +  +L+ H    H
  gw1.5.634.1 246 RCPHCGREFADAVQLVAHVEQqH 268
                  7*****************87655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.75E-5234No hitNo description
Gene3DG3DSA:4.10.1110.107.4E-5333IPR000058Zinc finger, AN1-type
SMARTSM001540.41541IPR000058Zinc finger, AN1-type
PfamPF014281.1E-8533IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.8E-1069125IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.83E-1077127No hitNo description
PROSITE profilePS510398.58284137IPR000058Zinc finger, AN1-type
SMARTSM001540.01487128IPR000058Zinc finger, AN1-type
PfamPF014285.8E-1087124IPR000058Zinc finger, AN1-type
SMARTSM003550.17198221IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.681198226IPR007087Zinc finger, C2H2
PROSITE patternPS000280200221IPR007087Zinc finger, C2H2
PROSITE profilePS501579.972245268IPR007087Zinc finger, C2H2
SMARTSM003550.019245268IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280247268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
IGRHCAHADC HQLDFLPFRC DRCSKVYCLE HRVCPCSKDG DTVLVCPLCA KAVVCPPGGD  60
VELVYDRHTR TECDPSNYDK VHRKPRCPVG GCKEKLTTIN SYTCRECGVT VCLKHRLAAD  120
HKCQVPRQQP APVAAGGGSS SRRPTVAQKA AAVAAKTKDS IQSQLQQYRQ QRKGGPPGAA  180
GVVDLTGSSP TATPNGAEQC PQCGVRFATV QQLIEHAEAA HSGGWSSGAV NMQQQQHVPP  240
AGGLERCPHC GREFADAVQL VAHVEQQH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005849841.10.0hypothetical protein CHLNCDRAFT_17292, partial
TrEMBLE1Z9960.0E1Z996_CHLVA; Uncharacterized protein (Fragment)
STRINGXP_005849841.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP481244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.14e-53C2H2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]