PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.7.1039.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family NF-YB
Protein Properties Length: 106aa    MW: 11802.5 Da    PI: 6.7644
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.7.1039.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB38.72.4e-121104597
         NF-YB   5 drflPianvsrimkkvlPa....nak.......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 
                   d++lP a v r++k  l +    +ak       i k+a     ec+  fi ++t+ a+d c+  kr  i+++d+l a+ +  f + v+ ++  l+ +
  gw1.7.1039.1   1 DEELPRAHVKRLVKAKLCSldnvDAKgqsfepnIQKEALIAYGECAKIFIHYLTATANDVCRDHKRSIISAEDVLAAIDECDFPELVDDVRGTLSAF 97 
                   5678888888888877754222222222333338888888999************************************************999999 PP

         NF-YB  91 relegek 97 
                   + ++++k
  gw1.7.1039.1  98 QSAKRKK 104
                   9888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.108.1E-251105IPR009072Histone-fold
SuperFamilySSF471134.0E-192105IPR009072Histone-fold
PfamPF008088.1E-9378IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
DEELPRAHVK RLVKAKLCSL DNVDAKGQSF EPNIQKEALI AYGECAKIFI HYLTATANDV  60
CRDHKRSIIS AEDVLAAIDE CDFPELVDDV RGTLSAFQSA KRKKKA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001418976.17e-60predicted protein
TrEMBLA4S0I11e-58A4S0I1_OSTLU; Uncharacterized protein
STRINGABO972693e-59(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP34531313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.15e-24nuclear factor Y, subunit B11