PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.8.144.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family E2F/DP
Protein Properties Length: 486aa    MW: 53330.9 Da    PI: 9.2026
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.8.144.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP71.31.1e-221075171
      E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                 rk+ksL+ll+++fl+ +   +++ v+l+++a++L    v  +rRRiYDi+NVLe+++++ +k+kn+++w+g
  gw1.8.144.1 10 RKDKSLGLLCENFLARYGDGSTDDVSLDDAATTL---GV--ERRRIYDIVNVLESIDVMVRKAKNQYSWHG 75
                 79********************************...**..****************************98 PP
2E2F_TDP63.72.6e-20181260170
      E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....dvknkrRRiYDilNVLealnliek.....kekneirwk 70 
                  r+eksL+ll+qkf++l+  s+ ++v+l+++a+ L+ +     + k+k RR+YDi+N+L +l+li+k     ++k+++ w 
  gw1.8.144.1 181 RREKSLGLLSQKFVQLFLASKLNVVSLDTAARILLGDsqddaKLKTKIRRLYDIANILCSLHLIQKvhlanSRKPAFLWL 260
                  689***************************************999*********************99999999999995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.9E-25776IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.48E-14974IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.1E-271075IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023193.5E-191175IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.4E-21177261IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.3E-32181261IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.01E-11183260IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023192.8E-18183260IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0032876Biological Processnegative regulation of DNA endoreduplication
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
TTTTRAAYSR KDKSLGLLCE NFLARYGDGS TDDVSLDDAA TTLGVERRRI YDIVNVLESI  60
DVMVRKAKNQ YSWHGVRRLP ESLKRLKESG LREFGMNFEH EREANKNGSE GNSDNTSLER  120
SEEEESKPME TRNADSDGGA PGTTGSDKDA VRASSGEQQG APSNFVGQGR FTVPEAQNDS  180
RREKSLGLLS QKFVQLFLAS KLNVVSLDTA ARILLGDSQD DAKLKTKIRR LYDIANILCS  240
LHLIQKVHLA NSRKPAFLWL CRENSIAELI AQGKGLRWFD KPDADESVHN QKSHVGALGA  300
NEETTGAQAN GKKQQKRSAS KPSSTKPESK RPRGRPRLPG GDGKTVYPHL PRFDAVIPPE  360
RLESFNRLFA FTSVQLAQRY PLDLNTDLQK LIAQTTIGNS NFLHHLAQVS MAQAHAAHQL  420
MATQTQTPSM TSNAASSVGT DLGAGAAPVV GPLPPFGAVM PVWGMSGMSY QNNSMQEMMQ  480
MYENSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A4e-4792533228Transcription factor E2F8
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00397DAPTransfer from AT3G48160Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001419177.11e-173predicted protein
TrEMBLA4S1M61e-172A4S1M6_OSTLU; Uncharacterized protein
STRINGABO974701e-172(Ostreococcus 'lucimarinus')
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP41861012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.14e-61DP-E2F-like 1