PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.8.374.1
Common NameCHLNCDRAFT_15825
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C3H
Protein Properties Length: 64aa    MW: 7540.56 Da    PI: 8.8579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.8.374.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH49.85.6e-16127127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 + telCr + +tG C+yG++C+FaHg+
  gw1.8.374.1  1 WQTELCRSWEETGSCRYGAKCQFAHGR 27
                 78***********************96 PP
2zf-CCCH49.95.2e-163964126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 ykte Cr+fa++GtC+yG rC+F+H+
  gw1.8.374.1 39 YKTEVCRTFAQSGTCPYGTRCRFIHS 64
                 9************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.9E-6127IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-13127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338128IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-19133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-10132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-163464IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-103564IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-63864IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.8543864IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-123964IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
WQTELCRSWE ETGSCRYGAK CQFAHGREEL RPVLRHPKYK TEVCRTFAQS GTCPYGTRCR  60
FIHS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-27164467Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005848580.13e-41hypothetical protein CHLNCDRAFT_15825, partial
SwissprotP479803e-27TIS11_DROME; Protein TIS11
SwissprotQ5ISE23e-27Z36L3_MOUSE; mRNA decay activator protein ZFP36L3
TrEMBLA0A2P6THQ84e-39A0A2P6THQ8_CHLSO; Ankyrin repeat domain-containing 13C isoform A
TrEMBLA0A2P6THR34e-39A0A2P6THR3_CHLSO; Ankyrin repeat domain-containing 13C isoform B
TrEMBLE1ZCQ57e-40E1ZCQ5_CHLVA; Uncharacterized protein (Fragment)
STRINGXP_005848580.11e-40(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP36231314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.29e-28C3H family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]