PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.8.732.1
Organism
Ostreococcus sp. RCC809
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family C2H2
Protein Properties Length: 206aa    MW: 23230.6 Da    PI: 8.6283
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.8.732.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000517082214
                 EETTTTEEESSHH CS
      zf-C2H2  2 kCpdCgksFsrks 14
                 +Cp Cgk+F+ ++
  gw1.8.732.1 70 ECPLCGKTFTKQY 82
                 5********6665 PP
2zf-C2H219.52.6e-06126149123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  ykC  C  +Fs++ +LkrH +t H
  gw1.8.732.1 126 YKCRVCAVPFSTQQMLKRHEQTvH 149
                  9*******************9988 PP
3zf-C2H2156.9e-05156180223
                  EET..TTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                  +Cp   Cg +F++  +   Hir+ H
  gw1.8.732.1 156 PCPvdGCGIMFKHAQSVAEHIRRvH 180
                  69999******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00355156991IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7026996IPR007087Zinc finger, C2H2
SuperFamilySSF576673.49E-670118No hitNo description
Gene3DG3DSA:3.30.160.607.5E-47095IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.608.2E-696119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.9997122IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028099122IPR007087Zinc finger, C2H2
SMARTSM003550.021126149IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.489126154IPR007087Zinc finger, C2H2
PfamPF138943.7E-4126149No hitNo description
PROSITE patternPS000280128149IPR007087Zinc finger, C2H2
SuperFamilySSF576672.18E-11135193No hitNo description
SMARTSM003550.0074155180IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.801155185IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-5155182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280157180IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-8183206IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355260186206IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045814Biological Processnegative regulation of gene expression, epigenetic
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008097Molecular Function5S rRNA binding
GO:0032452Molecular Functionhistone demethylase activity
GO:0046872Molecular Functionmetal ion binding
GO:0080084Molecular Function5S rDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
GESDWRRRFE KMTSRDAEEA LGEMRGMLAC VEEKEYVAVH GTIVGDDASM LEAIRDATNA  60
PARPRAARAE CPLCGKTFTK QYLPTHVAKA HTGVKPVECS FPRCRETFAD VKSMERHVAL  120
VHDQKYKCRV CAVPFSTQQM LKRHEQTVHN STKTIPCPVD GCGIMFKHAQ SVAEHIRRVH  180
TSDKPYVCSY PGCTRAFASK KDHDRH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2i13_A6e-157019824172Aart
2i13_B6e-157019824172Aart
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00229DAPTransfer from AT1G72050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022841017.14e-61Zinc finger C2H2-type/integrase DNA-binding domain
TrEMBLA0A090M8Q18e-60A0A090M8Q1_OSTTA; Zinc finger C2H2-type/integrase DNA-binding domain
TrEMBLA0A1Y5IJA48e-60A0A1Y5IJA4_OSTTA; Zn-finger
STRINGA0A090M8Q11e-60(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP70653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.17e-15transcription factor IIIA