PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID gw1.9.419.1
Common NameCHLNCDRAFT_17840
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family SBP
Protein Properties Length: 77aa    MW: 8726.02 Da    PI: 9.5226
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gw1.9.419.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP85.66.2e-27377276
                 -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
          SBP  2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76
                 Cq++gC+adls + +y+ r ++C  h  a++ l +g e rfCq+C+  h l e+D  krsCrr La hn+rrrk+
  gw1.9.419.1  3 CQADGCRADLSALPRYNVRNHICLEHKAAEAFLKQGAEVRFCQRCGVAHPLGEYDGLKRSCRRMLALHNSRRRKS 77
                 *************************************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114122.204177IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.81E-24376IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.103.8E-22364IPR004333Transcription factor, SBP-box
PfamPF031101.7E-26376IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
GECQADGCRA DLSALPRYNV RNHICLEHKA AEAFLKQGAE VRFCQRCGVA HPLGEYDGLK  60
RSCRRMLALH NSRRRKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-153761184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17176SRRRKS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005847945.12e-50hypothetical protein CHLNCDRAFT_17840, partial
TrEMBLE1ZEB84e-49E1ZEB8_CHLVA; Uncharacterized protein (Fragment)
STRINGXP_005847945.17e-50(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP2012101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.17e-20squamosa promoter binding protein-like 15
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]