PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

kfl00013_0370

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

Protein Properties

Length: 151aa MW: 16814.3 Da PI: 5.092

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00013_0370	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	72.2	8.7e-23	12	100	2	90
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkky 90 +++d lP a v +++++++P +a++s++ k+++ +c +efi++v+sea++ c +ekr t+ ++ +l al +lGf + ++++k +++ kfl00013_0370 12 KDTDVGLPKATVHKVVREMFPPDARLSNEVKDLLADCCTEFITLVSSEANELCDKEKRSTLMPEHVLAALENLGFANLLDEVKETWRQH 100 688999**************************************************************************999766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.0E-34	11	144	IPR009072	Histone-fold
SuperFamily	SSF47113	1.36E-32	15	143	IPR009072	Histone-fold
Pfam	PF00808	3.1E-20	18	81	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 151 aa Download sequence Send to blast
MADLETTAGK PKDTDVGLPK ATVHKVVREM FPPDARLSNE VKDLLADCCT EFITLVSSEA 60 NELCDKEKRS TLMPEHVLAA LENLGFANLL DEVKETWRQH KAAMLESPKP MDKWSKQGPK 120 MSDEEAIAAQ QKMFAEARAR MQTKSPLGES L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	2e-31	13	138	11	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002965285.2	2e-50	protein Dr1 homolog
Refseq	XP_024516159.1	2e-50	protein Dr1 homolog
Swissprot	P49592	1e-43	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A1Y1HIW5	1e-106	A0A1Y1HIW5_KLENI; CCAAT-binding factor
STRING	EFJ12470	6e-50	(Selaginella moellendorffii)
STRING	EFJ34123	6e-50	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP3449	17	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	6e-46	nuclear factor Y, subunit B13

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]