PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00052_0380
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family WOX
Protein Properties Length: 461aa    MW: 48730.2 Da    PI: 5.175
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00052_0380genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.94.2e-14156217257
                    T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox   2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                    ++R+++ + q  +L ++F++    +ps+++++eL ++l     +te++V++WFqN++a+ k+
  kfl00052_0380 156 KHRWAPAEAQKAALDRVFQElgGGTPSKARIKELVTELgrhgPVTESNVYNWFQNKKARSKR 217
                    79*****************8779***************99999*****************97 PP
2Wus_type_Homeobox66.55.1e-22156218364
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                        ++RW+P + Q   L+++++  G  tP+k++i+++ +eL ++G +++ NV++WFQN+kaR+++k
      kfl00052_0380 156 KHRWAPAEAQKAALDRVFQeLGGGTPSKARIKELVTELGRHGPVTESNVYNWFQNKKARSKRK 218
                        78****************977****************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-13150219IPR009057Homeodomain-like
PROSITE profilePS5007112.422152218IPR001356Homeobox domain
SMARTSM003894.4E-8154222IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-10156221IPR009057Homeodomain-like
CDDcd000861.54E-9156218No hitNo description
PfamPF000468.5E-12156217IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0051301Biological Processcell division
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MLALEAVSDT LARLHPVSIP PSPLDPNGCL QKLQRIDTPR GVLEGAVRQQ SSVTEHTLEG  60
GGEVNEGASA QSPLVMEKGG NGQQGEGVGQ ENRPPPGQEM TPEQIETLRR QVAVYCGICD  120
NLMALHRAKM SGTQGPLQGM DAYYQDASAM INRGGKHRWA PAEAQKAALD RVFQELGGGT  180
PSKARIKELV TELGRHGPVT ESNVYNWFQN KKARSKRKVA ATEAESGIDD RNPKRTREDG  240
AHSSGSLNIT SSFDVDRMSE GGVVSSGFEQ RPAPAQQLQT PLGWRSGALA HDIPAPRTQL  300
FADSSIQDAA AMLLYAAAEN AGQGGGSAAQ SLANTLGLLG AAQDGASFFQ GGQGGSNMGG  360
GLDLPYGALT GESAYSQPQA ETSLKVMING RPYDVPAGPL DVRASFGEGM VLYDSRGVQV  420
LTDNLGVTFD ALHNGESYYL QSELQPGLGL DHDRLGRALF P
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00669PBMTransfer from GRMZM2G038252Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1HP060.0A0A1Y1HP06_KLENI; Homeobox domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP18731639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20700.12e-31WUSCHEL related homeobox 14