PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00056_0320
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 152aa    MW: 17074.4 Da    PI: 8.3769
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00056_0320genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.81e-1480105126
                    --S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                    yktelC+ + + G+C+yG++C+FaHg
  kfl00056_0320  80 YKTELCNKWEEQGQCPYGPKCQFAHG 105
                    9************************8 PP
2zf-CCCH19.81.4e-06118143126
                    --S---SGGGGTS.--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                    +kte+Cr   ++G  C+yG rC+F H+
  kfl00056_0320 118 FKTEICRLV-ANGyKCPYGHRCHFRHS 143
                    69*****55.5588**********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.75E-1176111IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-1976112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.79379107IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-879106IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-1280105IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-11113145IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-8114144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.882117145IPR000571Zinc finger, CCCH-type
SMARTSM003560.0033117144IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MGNLPYFGLG LRNLDSLPTA GGISLAAHVP ALLPKSINVR ESTLRAVKEE QERGVKRARE  60
EDDHDAGEAR KKAASHPGYY KTELCNKWEE QGQCPYGPKC QFAHGIEELR PVLRHPKFKT  120
EICRLVANGY KCPYGHRCHF RHSIEGDDVP VL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-2280145469Butyrate response factor 2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00383ampDAPTransfer from AT1G68200Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010693523.18e-38PREDICTED: zinc finger CCCH domain-containing protein 14
RefseqXP_019164905.11e-37PREDICTED: zinc finger CCCH domain-containing protein 15
RefseqXP_019164906.11e-37PREDICTED: zinc finger CCCH domain-containing protein 15
SwissprotQ6L5G17e-34C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLA0A1Y1HR261e-109A0A1Y1HR26_KLENI; CCCH-type Zn-finger protein
STRINGXP_010693523.13e-37(Beta vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP20581636
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.24e-36C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]