PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

kfl00147_0060

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

Protein Properties

Length: 156aa MW: 16935.5 Da PI: 7.5035

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00147_0060	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146	1e-45	9	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrrkC++dC +apyfp +qp+kfanvhk+FGasn++kll++lp ++reda++sl+yeA+ar++dPvyG+vg i+ lqqq+++l+aela kfl00147_0060 9 PCAACKFLRRKCTPDCLFAPYFPPDQPQKFANVHKIFGASNITKLLHDLPLSQREDAVNSLAYEADARVKDPVYGCVGAISVLQQQVAHLQAELAI 104 7**********************************************************************************************9 PP DUF260 97 lkee 100 +++e kfl00147_0060 105 AHAE 108 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.031	8	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.5E-44	9	106	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MAGPSQMSPC AACKFLRRKC TPDCLFAPYF PPDQPQKFAN VHKIFGASNI TKLLHDLPLS 60 QREDAVNSLA YEADARVKDP VYGCVGAISV LQQQVAHLQA ELAIAHAELT RIHTTTVPPL 120 QDDHENPAVL SVAMSSRPLV SQALASYAGL KPDSMR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-57	4	111	6	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-57	4	111	6	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024356367.1	4e-61	protein LATERAL ORGAN BOUNDARIES-like isoform X1
Swissprot	Q8L8Q3	8e-55	LBD25_ARATH; LOB domain-containing protein 25
Swissprot	Q8LBW3	2e-54	LBD12_ARATH; LOB domain-containing protein 12
TrEMBL	A0A1Y1I1U4	1e-111	A0A1Y1I1U4_KLENI; Lateral organ boundaries (LOB) domain-containing protein
STRING	PP1S170_93V6.1	1e-60	(Physcomitrella patens)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP60	16	318

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	4e-57	LOB domain-containing protein 25

Publications ? help Back to Top
Penfield S, et al. Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1. Plant Cell, 2004. 16(10): p. 2705-18 [PMID:15367715] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]