PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00155_0010
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 1316aa    MW: 144922 Da    PI: 8.7152
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00155_0010genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.76.2e-0612941314425
                     ---SGGGGTS--TTTTT-SS-S CS
        zf-CCCH    4 elCrffartGtCkyGdrCkFaH 25  
                     + C++fa+ G+C  Gd+C F H
  kfl00155_0010 1294 RACMYFAK-GYCVKGDTCDFLH 1314
                     68******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.40.102.5E-976133IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF579032.38E-778130IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500168.66280144IPR019787Zinc finger, PHD-finger
CDDcd155684.72E-1882125No hitNo description
SMARTSM002496.7E-982126IPR001965Zinc finger, PHD-type
PROSITE patternPS01359083141IPR019786Zinc finger, PHD-type, conserved site
PROSITE patternPS013580120141IPR001876Zinc finger, RanBP2-type
Gene3DG3DSA:1.10.245.109.0E-17265344IPR003121SWIB/MDM2 domain
SuperFamilySSF475926.98E-16269346IPR003121SWIB/MDM2 domain
PfamPF022015.7E-12271341IPR003121SWIB/MDM2 domain
PROSITE profilePS5136011.967403537IPR004343Plus-3 domain
SMARTSM007199.4E-16403505IPR004343Plus-3 domain
SuperFamilySSF1590423.53E-16404501IPR004343Plus-3 domain
PfamPF031261.6E-14408501IPR004343Plus-3 domain
SuperFamilySSF552772.09E-1410201080IPR003169GYF domain
PROSITE profilePS5082913.79410271081IPR003169GYF domain
SMARTSM004441.6E-910281083IPR003169GYF domain
PfamPF022134.1E-1010291070IPR003169GYF domain
Gene3DG3DSA:3.30.1490.401.6E-1510291081IPR003169GYF domain
PROSITE profilePS5010312.3812901316IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-612901315IPR000571Zinc finger, CCCH-type
SMARTSM003569.6E-412911316IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010964Biological Processregulation of chromatin silencing by small RNA
GO:0032776Biological ProcessDNA methylation on cytosine
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0042393Molecular Functionhistone binding
Sequence ? help Back to Top
Protein Sequence    Length: 1316 aa     Download sequence    Send to blast
MAENVKADDV EETSLRGDEF LADPDEGKGS DTETTHTDLQ EEIEEQDDGV KSAFSRKRPP  60
EEYPTEGKKA KVEVEEKVTE DVCFVCHDGG ALVACDKRDC PKVYHTECIG VDVVEENKTW  120
YCGRHYCEEC NKPAAYHCVT CYRAYCPAHF RTADFTVLKK KLGLCFMCLP QVRLIEGGDV  180
SETGDSEIEV KEILFRDYWL NQRSKLGLSL PKTEGARQLR SSAQAPAAAE GEQAEGDEEG  240
SAATDDLGAD DDATAAAPAP AERRKFDSWA SPELLAFLGG RGHDVSKALP RDDVEKAVWD  300
HVREKGLQAP DKPAEIRCDE ALEKLLRRKT VGRLAMLRIL QEQFSGSLTQ RGVSGRRLQK  360
GPSAGKGRKV TKRLTRTDSK KKKSAAATSK DAEDGATKEQ YAAISRKNIE LLYIRRSLLE  420
SLVESPDFER VVLGAFVRIK TIAIDNPTKA AYRLVPVIGF AEGTEYTFGR KPTKRLLKVQ  480
NLSKVEDTLM DTLSSQDFDE DFDEAHPGLP FRFPSCFACL YSNIRFSELK SVDKVFSQDF  540
DEDEMARLWR ATKVAEVFQP MTVGHVEAKA REILPFRVDE AMEAEKQKLI NLRDRASELG  600
EMKELKRIVE QLKEVERPET RAGRLSAPLG IEADPKMDPA VPYDPEAEER EKKEKEAQQR  660
AAEQKKATAA PVKSPRNRRD DRTSRWGPAG RGSDPPGKDD RRKGADSGLD KRRPIERAPE  720
RSRERSRERE RERGRRSPYQ GGRGGPRDRD IVSPRDDDRR KESGPDRRGG GERFNERPPR  780
ASRFDEPPPR GGDSSRPGIS PRFGGDRPRD RERGPSNDRP GNGFERKERT PPFGPGFLGP  840
PGNGGRGSGF MAPSGGGGRG GPPPREGPGR SVVRDARDLP LLQTPPTFAA PVRPPMDLGA  900
LHVRDPSKNR QPFAGPFDNR PSGNRPEYGK YDAPRALDPP RTFEPQRSFE PPPAVTQQQQ  960
GAPPTRTPPL HTDTAGYRGF GDRSGVRPPF RSGQPPPIAP LPIPAALPPA APAPAAVPVP  1020
PYVPPPDPKW HYRDPQGVQQ GPFTLAQLKK WQATGAFPSE LKVWMENRPE SSAVLLTSIL  1080
ATEAGRPSQP APSQAPAAQV GGTFQSRTPA EPARTATPPV SHERPEATRF GGTSRWEPAP  1140
GGPRNNPQPS YGASARPNET ASGVQGYQGE VRGPSESTFV SRDYAPRPSE GDRVQSSFGR  1200
ANGGRGPPAN FARAQDEGDR WKGNPLPRGD VTRGQFDAAP RRNLETGPGG NVAPQYRGQP  1260
PAGGSSRDGY EERAERPYGA QGPPGSMHRP KQNRACMYFA KGYCVKGDTC DFLHQR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A3e-1465153187Histone-lysine N-methyltransferase NSD3
4gnd_C3e-1465153187Histone-lysine N-methyltransferase NSD3
4gne_A3e-1465153187Histone-lysine N-methyltransferase NSD3
4gnf_A3e-1465153187Histone-lysine N-methyltransferase NSD3
4gng_A3e-1465153187Histone-lysine N-methyltransferase NSD3
4gng_D3e-1465153187Histone-lysine N-methyltransferase NSD3
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1724734RSRERERERGR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I3530.0A0A1Y1I353_KLENI; RNA polymerase I transcription factor UAF
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1807911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.14e-56nucleic acid binding;zinc ion binding;DNA binding