PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00162_0180
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 644aa    MW: 69493.5 Da    PI: 4.967
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00162_0180genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.7e-06134158227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     t++C f+a+ G C  Gd C+++H++
  kfl00162_0180 134 STVPCVFYAQ-GKCMKGDACPYSHSM 158
                    699*******.*************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.1E-56087IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4226088IPR000571Zinc finger, CCCH-type
PfamPF156631.0E-962118No hitNo description
SMARTSM003560.3891117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.01991118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.014132159IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-6132158IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6133157IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MLLKDHIRRL QNSVDAPAVE PLCLDLPVTA KKDRPIASVE RAVNKIKAGY LFEMAIPITL  60
RKSTDCTFYL QGNCKKGDTE CEFRHNPLAL NPAVKDCAFW FNGRCAKGPA CPFRHLAQNY  120
GAYGMPRAPT VDPSTVPCVF YAQGKCMKGD ACPYSHSMTL AASAVNSVDI AGGAVAEEGE  180
LLQGGQVPAE AGAADAGRRK LSWRAQAQAA AEPSPGQENM VLQFDEEDEE ADAAAPGSDR  240
RKSTPSKARR GPIWDVRTSV GRAGETIRSV ARPEPAVRQI VRENWETGRE NRGENRGENR  300
GESRVTHMED RLGRRRVGGG REEMGDRGAP RRVVATTSPS VKDRLGGGAN QGSHLRVQAR  360
VDAQDSQRER LVVDLQRASL AKGADRWGRN RNQGEQPVVH RPEVARPARA VEVSAEDENG  420
GPRKFGAEAR RRWLEQQKEK GVPGETKGSG GYGAPERSGE GARMRELVEL DGSNRRIRAT  480
SGSVRGPDAN EKVAEKKDGP RILTLAEIRA AKKRAREIEE AGRAEPDSAA REGKRPAPVK  540
LNRAGLAASP REAGNSGEAN AEEVQESTRD EAAEGGGDDI GAEDANGGED EEANMDADAE  600
EGDYADAGEE EDGSEYEEEE GDEGDDGEDD IASLMKKYGD AAED
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I3100.0A0A1Y1I310_KLENI; CCCH-type zinc finger protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24551220
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.12e-07C3H family protein