PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00192_0070
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C2H2
Protein Properties Length: 201aa    MW: 22640.3 Da    PI: 7.8383
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00192_0070genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.8e-05113136223
                    EET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                    +Cp   Cgk+F++    ++H r H
  kfl00192_0070 113 VCPyeGCGKVFPDMGAIRKHARIH 136
                    79999*****************99 PP
2zf-C2H220.11.7e-06141165123
                    EEET..TTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                    y+C+   Cgk+F ++s LkrH   H
  kfl00192_0070 141 YQCTfeGCGKRFVDSSKLKRHFLIH 165
                    99*******************8877 PP
3zf-C2H2218.7e-07172196223
                    EET..TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCp..dCgksFsrksnLkrHirt.H 23 
                     Cp   C k Fs ++nL++H r+ H
  kfl00192_0070 172 ICPyeGCRKAFSLPYNLRSHVRStH 196
                    69999*****************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.19E-7103152No hitNo description
Gene3DG3DSA:3.30.160.601.5E-10111138IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64112141IPR007087Zinc finger, C2H2
SMARTSM003557.4E-4112136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280114136IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.2E-14139161IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.7E-4141165IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.669141170IPR007087Zinc finger, C2H2
PROSITE patternPS000280143165IPR007087Zinc finger, C2H2
SuperFamilySSF576671.79E-12152199No hitNo description
Gene3DG3DSA:3.30.160.603.6E-17162196IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.003171196IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.055171201IPR007087Zinc finger, C2H2
PROSITE patternPS000280173196IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MEAAGPMIDS ANGVSSNWGE EGLQEADEQR PEQETPSSRY GTSQDGQPPL WVRRWVETSS  60
SIAPGKIQVL KWVKYDPQDD VSQGTPAQTE APLTSPTSGQ KRRRRETPNQ EIVCPYEGCG  120
KVFPDMGAIR KHARIHGEKA YQCTFEGCGK RFVDSSKLKR HFLIHTGEKS WICPYEGCRK  180
AFSLPYNLRS HVRSTHDPEF T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C2e-26112193685PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010930779.19e-44zinc finger transcription factor YY1
TrEMBLA0A1Y1I6Z91e-149A0A1Y1I6Z9_KLENI; Uncharacterized protein
STRINGXP_008781553.11e-42(Phoenix dactylifera)
STRINGXP_008807673.11e-42(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP38561626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.13e-40C2H2 family protein