PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00197_0160
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 423aa    MW: 44163 Da    PI: 9.4165
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00197_0160genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.82.4e-10628326
                   S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                   ++ Cr+f++ G C++G++CkF+H+
  kfl00197_0160  6 QPVCRDFQK-GNCRFGAQCKFSHD 28
                   689******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003566.7E-8329IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.187330IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-5428IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-8628IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-6829IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MARRQQPVCR DFQKGNCRFG AQCKFSHDIG QSGGGRPQKN VFGSNAFAPL ASGAKAPGTP  60
AKASDKPEHR CNNPRVCQDQ IREDFQTEKP KWWTLSAYAH WKSLPNDISG DVSFEELRWE  120
GYKAAQQGTP LQQVVAREQQ LVRTKESEYQ QLLLNPYRGP GQTQAVTSPP PAGTALLFGK  180
PVTPVNQPTN PPFGQTGYGQ PASFGTPPPA FGTQANSPFA QPQTQTQTIF GSKAATPSQS  240
GFGQTPGGNI FGVKPAVTPS PFGAPSSPFG SQALTTPQTT AQTPFGGGTI FGRQATPGIA  300
TPSGFGGFGP QTPAPSQSIF GRTPSGAAPS PFGAQPGGQF GTQPIPSFGS GGASSPFGAG  360
AQNSFGAANG NMMNVHEMGA SPAVSTAAPP PSEPGGDPHR DVWLAEKFEL GKIPEEEPPI  420
YAR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I7B90.0A0A1Y1I7B9_KLENI; Nucleoporin-like protein 2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP78131415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.12e-32C3H family protein