PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00224_0090
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 955aa    MW: 104480 Da    PI: 7.6374
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00224_0090genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07473492525
                    --SGGGGTS--TTTTT-SS-S CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                    +C+++++ G+C++Gd C+F H
  kfl00224_0090 473 ICKYYLQ-GYCSRGDGCPFVH 492
                    8******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.291468495IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-7469493IPR000571Zinc finger, CCCH-type
SMARTSM003560.0026469494IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-5473492IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-5473494IPR000571Zinc finger, CCCH-type
PROSITE profilePS5030385.546544942IPR033133Pumilio homology domain
Gene3DG3DSA:1.25.10.109.4E-79553773IPR011989Armadillo-like helical
SuperFamilySSF483712.11E-71565771IPR016024Armadillo-type fold
SMARTSM000259.3E-6567602IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.317567602IPR001313Pumilio RNA-binding repeat
PfamPF008062.7E-5568595IPR001313Pumilio RNA-binding repeat
CDDcd079203.46E-140570936IPR033712Pumilio, RNA binding domain
SMARTSM000253.1E-9603638IPR001313Pumilio RNA-binding repeat
PfamPF008064.3E-10603636IPR001313Pumilio RNA-binding repeat
PROSITE profilePS5030212.444603638IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503028.874639677IPR001313Pumilio RNA-binding repeat
SMARTSM000250.84641676IPR001313Pumilio RNA-binding repeat
PfamPF008061.1E-5644675IPR001313Pumilio RNA-binding repeat
SMARTSM000258.8E-7678713IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.247678713IPR001313Pumilio RNA-binding repeat
PfamPF008068.9E-8679712IPR001313Pumilio RNA-binding repeat
SMARTSM000252.7E-4714749IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503029.107714749IPR001313Pumilio RNA-binding repeat
PfamPF008061.7E-5717747IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503025.654750768IPR001313Pumilio RNA-binding repeat
SuperFamilySSF483719.21E-29814936IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.105.8E-34821939IPR011989Armadillo-like helical
PROSITE profilePS503029.364843878IPR001313Pumilio RNA-binding repeat
SMARTSM000257.1E-5843878IPR001313Pumilio RNA-binding repeat
PROSITE profilePS503027.871879916IPR001313Pumilio RNA-binding repeat
SMARTSM0002516881916IPR001313Pumilio RNA-binding repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 955 aa     Download sequence    Send to blast
MEPDDDGEFE QLLGEIPRAT SAPPHLEELQ KAYGGQLDDP LLLMRPDESP VVNPNIDIRS  60
DELYDTFYRS YSGTKKLPPP LPLEDARRGE TSGLSPRGLQ PQLSPFYSGL DLDSPRFVRS  120
HLSQHGGPSP QHLPQHYHSP HHPPPSHHQR RHSQEHLDSV HGHGHRRHSS QGFLDRDLSL  180
VSSFGGLSMD EGGSSRSGGG TGDSITSGGG ASPGDDSRLK LQQLRRSYDA MDGGYQEGFA  240
KNGGGGLSSF GSASSLDGYI SRASLGGLDG LGKRVPAADH GFSQRSASVE SFQGGGSLEQ  300
LLRTRSSPVY DNAGYSRSGK ASSSSLEGYP GSGNLDAYVS RLNGAADLYA PQVPPAYLSE  360
YDVAAFLQTQ QQMQKAVLQT QRLQQQMEEE RLRHRLQQQQ LLLQQQALAA AAVQQQRFHQ  420
SQMEAAAAAG MPYARSYSPP QRMPSPLHTP PLHKVRSGGG EAGWSGLERA GSICKYYLQG  480
YCSRGDGCPF VHAEPKKEQR GAPAMPHSRE EPRYRYGGEK GIPRPASRER LVGNGSNGHH  540
HHGGGEHHLK ASPAVHPPLA KYTSLAEVEG KIYQIAKDQH GCRFLQKQFD EGGPGEVEKI  600
FREIIVHVVE LMTDPFGNYL IQKLLECCNQ EQRQAVLDRV IAAKELVSIS LNMHGTRAVQ  660
KLIETIAGPD QIRMVVSGLK PGVVTLIKDL NGNHVIQRCL QRLSNDDNQF IFDAAAQHCV  720
EVATHRHGCC VLQRCVDFAE GAQRQRLVAE IAANALVLSQ DPFGNYVVPY ITGLPWASAE  780
QLRRPVHLGL GLPGAFAEDI TRLISSLNPF LKPSQNPFLC SNYVVQYILD LGLPWASAEV  840
MTRLEGNYPY LATQKFSSNV VEKCLKLAAE DSRNRIVREL MLSPRLGHLL QDPYANYVVQ  900
SALTVSKGAV HAGLVDAIRP HLTAVRNSPY GKRILSQANL KLGRGDEGSD GDLRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dzs_A2e-6457077135234Pumilio homology domain family member 4
4dzs_B2e-6457077135234Pumilio homology domain family member 4
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I9400.0A0A1Y1I940_KLENI; Pumilio RNA-binding repeat proteins
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP82856