PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00242_0140
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C3H
Protein Properties Length: 778aa    MW: 83680.7 Da    PI: 6.7869
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00242_0140genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.72e-08141169126
                    --S---SGGGGTS...--TTTTT-SS-SS CS
        zf-CCCH   1 yktelCrffartG...tCkyGdrCkFaHg 26 
                    +kt  C   artG    C yG++C+F+H+
  kfl00242_0140 141 KKTNVCGVVARTGnsnACTYGSQCRFSHD 169
                    5999************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.113140171IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-5141169IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.629184208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.707.8E-78426668IPR013785Aldolase-type TIM barrel
SuperFamilySSF513955.68E-67430738No hitNo description
CDDcd028016.45E-93430664No hitNo description
PfamPF012071.3E-56433683IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360514532IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MEEPAQAAGG RIGEAEVTEV VTVATTSHQS LLPESLMQNV TAIQPSATEE VAVKEQNGGV  60
NGVGIDGVKP VRPPLSLEEK LARGIAPVRE EFLWTPEERD AWKKERAANT GQSAEGAADG  120
AKVSGSKLSK RAMKKARAEA KKTNVCGVVA RTGNSNACTY GSQCRFSHDL TLFLEKKAAD  180
LEGPCPFASD EPCPFGVACR YATKHNTGPA VEDGKPVFRG TAKKGPGDGV FVPRDEVNSL  240
DKDLQKRLWK QQIASPRASA ALKQLGIQIS HHGRQLEEEG VAGDMEQEGP SEPAHVQTKA  300
DHHIPSEALA ASVAQETNGV AEPSKVEPSK AEPQMDSAGL QAGSVDGSAL PLAEESGSAD  360
PAGREGTEAA EEGKRKVNGE SEPTAKRAKL VENGAGTEVG PTKLWDVNGG GAEGLGVERR  420
GKRTIDFRGK LYLAPLTTVG NLPFRRVCLG LGADITCGEM AMATNLLQGQ QSEWALLRRH  480
ASEAVFGVQI CGSKPDHVAR AAEMITDSCS VDFVDINMGC PIDLVVNKGA GSHLLLKPKR  540
IEQIVKCAVA ASRVPVTIKV RTGFLDKQAT SHLFMPQLSS WGAAAVTVHG RSRQQRYSKQ  600
ADWSYIARCA EAAKGVQLIG NGDVMSFEDY NAHVAEAPEL ATCMIARGAL VKPWLFTEIK  660
EQRHWDISAS ERLDLLRQYC KFGIEHWGSD DKGVETTRRF LLEWLSYLHR YVPAGLLEVL  720
PQKMAWRPPA YRGRSDLEIM MASDNAADWV RISEMLLGPA PAGFSFTPKH KSGTVENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A5e-2742766027257tRNA-dihydrouridine synthase B
6ei9_B5e-2742766027257tRNA-dihydrouridine synthase B
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1I3R40.0A0A1Y1I3R4_KLENI; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP57511213