PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

kfl00260_0090

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

Protein Properties

Length: 229aa MW: 25055.9 Da PI: 5.306

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00260_0090	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	48.6	1.7e-15	8	87	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 +++P rikk+++ad++v +++ +Pvl+s+a elf+ +l ++ + + +t+ s ++a+++ fdfl ++v + kfl00260_0090 8 TRFPTGRIKKVMQADDEVGKVAVASPVLISRALELFLQKLVDETYKVTIARNAKTVTGSHLKACIEANSDFDFLREVVAQ 87 689************************************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.73E-20	3	89	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	2.4E-23	5	73	IPR009072	Histone-fold
Pfam	PF00808	2.3E-15	9	72	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MKPKPLETRF PTGRIKKVMQ ADDEVGKVAV ASPVLISRAL ELFLQKLVDE TYKVTIARNA 60 KTVTGSHLKA CIEANSDFDF LREVVAQVPD LGNELKEEKG PGRPRKRKDE EEGADEEAGA 120 SNEGKACKLP RRGKADGSGA LKRQTSRKKK KDGQVEGERR VEVQNSFDLN SQPVDTARDE 180 VEGNGSAARS AAESDLQNQL LEKAIQEHQR APAAGAQTLD GVDDDYDDM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	9e-25	2	77	4	79	Transcription Regulator NC2 alpha chain
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	151	RKKKKD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002974769.1	6e-41	dr1-associated corepressor isoform X1
TrEMBL	A0A1Y1I9U9	1e-164	A0A1Y1I9U9_KLENI; Uncharacterized protein
STRING	EFJ24289	2e-40	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP2179	16	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	5e-38	NF-YC family protein