PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

kfl00265_0040

Organism

Klebsormidium flaccidum

Taxonomic ID

3175

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

C3H

Protein Properties

Length: 2221aa MW: 230275 Da PI: 11.0771

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00265_0040	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.1	2.2e-06	2097	2117	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + Cr f++ G+C++Gd+C+ H kfl00265_0040 2097 PVCREFLQ-GFCPRGDTCPQKH 2117 68****.********999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0099	2011	2039	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.497	2011	2040	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	78	2040	2064	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	7.2E-5	2066	2091	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.986	2066	2092	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.3E-4	2093	2119	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.286	2094	2120	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-4	2097	2117	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2	2120	2142	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	8.653	2121	2143	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0043484	Biological Process	regulation of RNA splicing
GO:0060149	Biological Process	negative regulation of posttranscriptional gene silencing
GO:0016607	Cellular Component	nuclear speck
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 2221 aa Download sequence Send to blast
MPGGGQRVVE SARKRSKEEG GPGGPAKRAR NGEREGRDLQ ENTRIAERGE GKAAFAQGIT 60 SSSTAKAGKA VRLRSSEVDA QEGRRLQPRG GRGASVKQGA SEELRKRNAE ERTDSRGGAW 120 ASQRGAERDE GRKAGELLKD SPGKPENQRK PEGSLTGAPE FRGVSSPPGF QDPRVFQLST 180 PLQRHRDSPT PPKTSPLADA IKQKVQLWQS AKAGTASGGG VNDSHGKDVQ TSRREGFNTA 240 RGAPVDIRRE GGVRTDQRGG PNSNQGGGQV SATLVNRLPS PLVGHPRDWQ KLSAGRGGGG 300 RLSHPVGGDQ GTVLTSHAQL AQRLAEIKER FSATPPLKLA APSVHWKPLE RPPSAEAPWD 360 PVKDFVAEIK ERVSSPTGKV TTEHASGRKN PESKPPERGQ ANERLARIKE RLSITPPPPE 420 RSPSGGPEPE TPAANSRLAQ IKERLSFPAA KNKPRENTPS TSFPRPSPAP ILIAPPPSVF 480 PPPQNPRPRS SQTAAPSISV KAPVSVQKAT EVAGAGTSED SGGENRGPET GVNRDTTPAG 540 SGAGAGQPDG VNKHQEGKQL KDRQVWKIPE RLQKLLDQGL VKDPPPAAHP PSAQAVQALN 600 LMHGASKLSK KQLQRLKGQA HESKELAKLQ GIVGMHNVPL IMQTYWEVKG RPNAADGAAS 660 NSSEPLFPIH EQIKILRQVA RKSRKKLGKL RKKEALQQRQ QTSGGVEKPG TGPTVACGGT 720 AKLEGEPGGP GGAPGKLAAN PSSDVENGAS AVGADLKGAS ISEGGGSVRS LGSEAVGTGG 780 TGSGPKESRV ERTAAGLEIS QRSVLGEAAV VTAGSNARKG LIGSGPKVGQ GASEGLRGSE 840 DGDVSGAPVT RRADSGLGRE KTLSGDTEML GGVGHALASG QSRGQVTAQG KTSGVSEARQ 900 KPSDVSSNAE RRADPCASIM VAPVGSTVGR QVAAEAGERK ADEGVSRLNG QSGVINTVGK 960 GVSQPTSEGE SRGDDVGQQK AALKAGEDLK GKLVETVTGK RKAAGGSESV AFKKHAGGSG 1020 GKAGASKGLL EKASELDGFK ARENLTSAVA HTEPVQLETG GGTSVQPGGS SVQPKAVLSA 1080 EQGLAKSAGL PGVGLAGTPA LSGSNELPQS SSGKSGYPSD PTKAGAQAPA QRSEHPLAEP 1140 VQTKPLSAKL QSAPSAAEPA PGWRSLPAGA VLGTRPLTSA PPGVVKPPAV DEGLLAELRA 1200 KALASQCKKA SEAVVKPSET TVKPSITTVT LSETTVRVSE RTIRLSEGVF GASETVVGAL 1260 GTRVMASETV ESQTAVVVRA SDAVRQPSAT AEKASETAGA RSVEAGKASD IAAPVGPSKR 1320 AAGASAAHKN AGPKPSAQTK AGGTTLKQST GVSIQTEAGS RQPAGQARGL LTLGAGQPAA 1380 ATASPPKLTP SVGVPQSAPG QNAVQAKPPL VSRPVFPGLL NPGLQFGSAV KPLDATNPPE 1440 GKPSQSQPLM LLNSTSPPKS TGLPAQQGSA FGISAPFISG ALGTNLAFGS GTTTKPGQNA 1500 PHPGLRQSLP SPDPPKGGQE KQLPSGFSTA GPLGKSSPED ALAATIKALR DSIQRQAEVA 1560 SSSMVGDSGS KSAKQELPRG KEEAPPGGGA SEQTRRLAYI KKRKNVLVRR VTPQRGALAQ 1620 ASRPVSESGV GADTGGNKGA GAVLSNRGVA PSGKSTPGES KRQVGGGLGK QRGGLRAGAL 1680 KRPVGNAVHQ RKALSWQRAS AASGATSAAS PHTPLLQGPR RKQGARGLTW KLGGPVTPGG 1740 APKLRQSSLK SPRQGPRGSG KFSAKKSGLG PGKPVGRQSA VKRRAALKWS RQKGTARTPG 1800 WATPLPWSDE KGSLLNMLRQ LRGQRSYTST YAKSTNGLSL KRTGAVGLKG NLKWTLSGGK 1860 KRKEAAEKAA QAVRGSLDND NGDPAGTSAR KRKAAAAARA TARSRRASLE ASLRRRPGAA 1920 PPNRERVITV GLATYKMDAG GRTLVRVSEP TTPGAFTPPA TTPRRASVNG QTFVRQGTSD 1980 RLVIDPTSAR KTLASGRLKW SLQNARRRRA TKGETLCPYF TKYGKCNREG ATCPFVHDKD 2040 KVAICTKFVL GRCENSDCTL THKIIPERMP VCKYFLEGTC TNERCPFRHV SVVPNAPVCR 2100 EFLQGFCPRG DTCPQKHTSV CPKFAADGQC EEGEKCGFYH PTKRTWTLAR ALKEAGRKRK 2160 RLRPAKPETP PDLGEGGILL PPDDGVESEA PERPRVRRRY FEADVSEVAR KIKPAFLFDD 2220 V

Sequence ? help Back to Top

Protein Sequence Length: 2221 aa Download sequence Send to blast

MPGGGQRVVE SARKRSKEEG GPGGPAKRAR NGEREGRDLQ ENTRIAERGE GKAAFAQGIT  60
SSSTAKAGKA VRLRSSEVDA QEGRRLQPRG GRGASVKQGA SEELRKRNAE ERTDSRGGAW  120
ASQRGAERDE GRKAGELLKD SPGKPENQRK PEGSLTGAPE FRGVSSPPGF QDPRVFQLST  180
PLQRHRDSPT PPKTSPLADA IKQKVQLWQS AKAGTASGGG VNDSHGKDVQ TSRREGFNTA  240
RGAPVDIRRE GGVRTDQRGG PNSNQGGGQV SATLVNRLPS PLVGHPRDWQ KLSAGRGGGG  300
RLSHPVGGDQ GTVLTSHAQL AQRLAEIKER FSATPPLKLA APSVHWKPLE RPPSAEAPWD  360
PVKDFVAEIK ERVSSPTGKV TTEHASGRKN PESKPPERGQ ANERLARIKE RLSITPPPPE  420
RSPSGGPEPE TPAANSRLAQ IKERLSFPAA KNKPRENTPS TSFPRPSPAP ILIAPPPSVF  480
PPPQNPRPRS SQTAAPSISV KAPVSVQKAT EVAGAGTSED SGGENRGPET GVNRDTTPAG  540
SGAGAGQPDG VNKHQEGKQL KDRQVWKIPE RLQKLLDQGL VKDPPPAAHP PSAQAVQALN  600
LMHGASKLSK KQLQRLKGQA HESKELAKLQ GIVGMHNVPL IMQTYWEVKG RPNAADGAAS  660
NSSEPLFPIH EQIKILRQVA RKSRKKLGKL RKKEALQQRQ QTSGGVEKPG TGPTVACGGT  720
AKLEGEPGGP GGAPGKLAAN PSSDVENGAS AVGADLKGAS ISEGGGSVRS LGSEAVGTGG  780
TGSGPKESRV ERTAAGLEIS QRSVLGEAAV VTAGSNARKG LIGSGPKVGQ GASEGLRGSE  840
DGDVSGAPVT RRADSGLGRE KTLSGDTEML GGVGHALASG QSRGQVTAQG KTSGVSEARQ  900
KPSDVSSNAE RRADPCASIM VAPVGSTVGR QVAAEAGERK ADEGVSRLNG QSGVINTVGK  960
GVSQPTSEGE SRGDDVGQQK AALKAGEDLK GKLVETVTGK RKAAGGSESV AFKKHAGGSG  1020
GKAGASKGLL EKASELDGFK ARENLTSAVA HTEPVQLETG GGTSVQPGGS SVQPKAVLSA  1080
EQGLAKSAGL PGVGLAGTPA LSGSNELPQS SSGKSGYPSD PTKAGAQAPA QRSEHPLAEP  1140
VQTKPLSAKL QSAPSAAEPA PGWRSLPAGA VLGTRPLTSA PPGVVKPPAV DEGLLAELRA  1200
KALASQCKKA SEAVVKPSET TVKPSITTVT LSETTVRVSE RTIRLSEGVF GASETVVGAL  1260
GTRVMASETV ESQTAVVVRA SDAVRQPSAT AEKASETAGA RSVEAGKASD IAAPVGPSKR  1320
AAGASAAHKN AGPKPSAQTK AGGTTLKQST GVSIQTEAGS RQPAGQARGL LTLGAGQPAA  1380
ATASPPKLTP SVGVPQSAPG QNAVQAKPPL VSRPVFPGLL NPGLQFGSAV KPLDATNPPE  1440
GKPSQSQPLM LLNSTSPPKS TGLPAQQGSA FGISAPFISG ALGTNLAFGS GTTTKPGQNA  1500
PHPGLRQSLP SPDPPKGGQE KQLPSGFSTA GPLGKSSPED ALAATIKALR DSIQRQAEVA  1560
SSSMVGDSGS KSAKQELPRG KEEAPPGGGA SEQTRRLAYI KKRKNVLVRR VTPQRGALAQ  1620
ASRPVSESGV GADTGGNKGA GAVLSNRGVA PSGKSTPGES KRQVGGGLGK QRGGLRAGAL  1680
KRPVGNAVHQ RKALSWQRAS AASGATSAAS PHTPLLQGPR RKQGARGLTW KLGGPVTPGG  1740
APKLRQSSLK SPRQGPRGSG KFSAKKSGLG PGKPVGRQSA VKRRAALKWS RQKGTARTPG  1800
WATPLPWSDE KGSLLNMLRQ LRGQRSYTST YAKSTNGLSL KRTGAVGLKG NLKWTLSGGK  1860
KRKEAAEKAA QAVRGSLDND NGDPAGTSAR KRKAAAAARA TARSRRASLE ASLRRRPGAA  1920
PPNRERVITV GLATYKMDAG GRTLVRVSEP TTPGAFTPPA TTPRRASVNG QTFVRQGTSD  1980
RLVIDPTSAR KTLASGRLKW SLQNARRRRA TKGETLCPYF TKYGKCNREG ATCPFVHDKD  2040
KVAICTKFVL GRCENSDCTL THKIIPERMP VCKYFLEGTC TNERCPFRHV SVVPNAPVCR  2100
EFLQGFCPRG DTCPQKHTSV CPKFAADGQC EEGEKCGFYH PTKRTWTLAR ALKEAGRKRK  2160
RLRPAKPETP PDLGEGGILL PPDDGVESEA PERPRVRRRY FEADVSEVAR KIKPAFLFDD  2220
V

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6fbs_C	4e-17	2013	2141	37	167	Cleavage and polyadenylation specificity factor subunit 4
6fuw_C	4e-17	2013	2141	37	167	Cleavage and polyadenylation specificity factor subunit 4

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	681	692	KSRKKLGKLRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Y1ID47	0.0	A0A1Y1ID47_KLENI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP4573	5	5