PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl00286_0110
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family NF-YB
Protein Properties Length: 158aa    MW: 17277.2 Da    PI: 4.3924
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl00286_0110genomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB42.61.5e-13371032591
          NF-YB  25 akiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                     +i kda e   + +  fi ++++ a++ cq+ +r t+n++d++ al ++ f+d +eplk  l   r
  kfl00286_0110  37 VQINKDALEAFVQSAKIFIHYLSATANEICQESRRSTVNAEDVIKALEEMEFDDLIEPLKEALGVLR 103
                    46999*****99************************************************9887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.8E-314141IPR009072Histone-fold
SuperFamilySSF471131.14E-237131IPR009072Histone-fold
PfamPF008086.7E-103383IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MSEAEDLPKA NVKRIVGAKL TEFQEQFAAD DKKGRAVQIN KDALEAFVQS AKIFIHYLSA  60
TANEICQESR RSTVNAEDVI KALEEMEFDD LIEPLKEALG VLRIEAQAQK GKRKAAPKKR  120
KPAEEPAEGV PVGDQEGEAE GAHGEEGGDE EMQEDQAG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024366136.19e-33DNA polymerase epsilon subunit 3-like
RefseqXP_024366137.19e-33DNA polymerase epsilon subunit 3-like
TrEMBLA0A1Y1ICC91e-107A0A1Y1ICC9_KLENI; Putative nuclear factor Y subunit B
STRINGPP1S217_34V6.13e-32(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP78621516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.18e-26nuclear factor Y, subunit B11