PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

kfl00432_0070

Organism

Klebsormidium flaccidum

Taxonomic ID

3175

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium

Family

C3H

Protein Properties

Length: 3522aa MW: 384275 Da PI: 9.636

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
kfl00432_0070	genome	KFGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20	1.2e-06	3090	3113	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++Crff+ G C+ G+ C+FaH++ kfl00432_0070 3090 SKPCRFFLM-GKCREGEACRFAHPR 3113 6799999.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12726	8.2E-22	95	726	IPR024481	Helicase Sen1, N-terminal
Gene3D	G3DSA:3.40.50.300	5.4E-53	1598	1668	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52540	2.06E-62	1615	1667	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF13086	1.8E-60	1621	1986	No hit	No description
SuperFamily	SSF52540	2.06E-62	1738	1767	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	5.4E-53	1739	1819	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SuperFamily	SSF52540	2.06E-62	1892	2207	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	5.4E-53	1939	2037	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF13087	2.2E-58	1993	2187	No hit	No description
Gene3D	G3DSA:3.40.50.300	5.6E-5	2078	2186	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00356	0.01	3064	3088	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	9.798	3064	3087	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	4.5E-4	3069	3086	No hit	No description
PROSITE profile	PS50103	15.563	3088	3114	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.6E-5	3089	3113	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-4	3089	3113	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.2E-5	3091	3115	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008266	Molecular Function	poly(U) RNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 3522 aa Download sequence Send to blast
MAAPQMRKLS LEEAAPQRKD LERRWNLLED AAANGSEDEE TERAKEQWFL DALLFLAKAP 60 LEQHSWCQFS DLSSLALESF YHYYSNPNQA LSLVWQRWCQ ELRSCDSCVH TYQRSKEEPK 120 SKEELREEFD GGPATEELFS VLDRLDQERV SQQLKEIKAL FEAGNYDPEQ SADLIFPTIY 180 EVLNYPAILE DAEVDRLVAP VLSFMDQVHA ISIGEYRPAG IYSLLFHNSP EGRAVATRLA 240 KTTPPFRDGQ ELEIVQPILH RKVALLQQLA GSAAIHVDGG GQLPEEKLAI FGGRPARPTR 300 VQEHLPLWLG LSTFLELLEP AAMLGGLVER HPDVVSTVLN QASEPGNPAF NVALKCLKLL 360 FQGVGYRLWW DTDFTPKVVR STLVSHCNTS RKENLHLTIF QLFEPFLQSL EVDRNTSDEF 420 YDERETLLKF LTKQVANSAS FSGVVKSKGL EVAFRIIQRG YTLVPPMPPS DLTPFWAPPL 480 VASLNNPATQ ETLRTQAVEL MSTIVVFDSS ALCSAVFPPA PGFSGASDLV AYLPGSNATL 540 GPQPSSGQEP LEVLEGQPAE SGWGAEWATL ETAAGSYAKE HFHPPALWQA LFLAAPPVNF 600 PGLLTKAVLW AATRLALLEE AVGLNPDQTA ADGAKDWPFV VVENDGKKVS NVVEASREGR 660 KDLVVLYRRC TAAYLDHLRQ RSVDGDVAVL QALEWETWIA ESLIILLLDP TALIRNADRE 720 VLKYFTADAT LDGGLRTLCA DAPAARAVSE GIFKASEKLL HMGFPKCSRG SQLLCFYASK 780 LLRINSSNEQ DAAEGSTEHV TLWAIACARI AEGLWPLLLR VLEGSRPAAE SFEPGPTAQG 840 LLPVADYLIS ASLFQRLIVH VFEAFVATWP FIRHRALPGA ALGRPSVRGD VSTPGAADVS 900 SPVRARGDVS RAPGFGSPAR TPSVFDLVEG GRLKPPGHQG DEWLVDFVKW GDVTRPAVRR 960 RWMECIELVG CEMVDAGARL PAAARGVVRD LLAPTSSLSD EQRLVLSQFF PHEAPGNLGQ 1020 SALDSLPSRP AHASPPKPAF PLRQPSFETP PRSKAPTASQ SRLTTSFLEG GSPPAPAGFF 1080 QPPPTAVPPK SPAIVIDLEE DDQPLSLRRK EAPRAGNSRR PIDLETESDS KSKSRSDTKT 1140 FVRTPAQTQS AEASTSGRES ADKEASKMAA SLAAFANRAS SRPSPWSRNS DTPGGSRSAA 1200 TPTNRTPPAP NRTSPMYSKR APPRYPQQVK IDSMLSRQRE EEELERVWAA ADGLGGFGSA 1260 GPGKRKTDST EASRKRESDS KPAPVKSPTV PMVPGGSAPQ PERPTNRGGG DEGSSVHSRG 1320 VPVPGPKVPQ LRPAAPRKTM RIELPGEGQT ASARARMRRF GSHAPPGPPP KPDDWYKKIL 1380 AMDFFRVVGT EDADEGLARP PNEGTDRLVQ VPDRFESASQ YAQVFRPLLM EEFKAQLQRV 1440 HDESGSSSNS EMLEVGHFKL LSLARRDDFW DANFVAGEDA ERNVRECSEL DLLLLTKHAP 1500 SKGDPSRIHV LAKVDRRDQR DSKGQRRQCT VLVLKLFLPI NEPRLLKVKQ LLTDGSKWHA 1560 TKLFSMVPQM REFQAMSAFH TLPMVSTLLN PSSAKPRSNS SNPSAIRKLP EPLQKHLLSR 1620 YNESQQAAIA SATDSGGSHN QRLTLIQGPP GTGKTSTIMG ILSALLSGPG GNVTRAERVP 1680 GGLGANRPVK APVKLSEREE SAILTAQAQR AWQQAEEAKE LMAKGEENGN GLAGGVQLGG 1740 EGAPRILLCA QSNAAVDELV ARLLKSGVWG ADGLPVRPSI VRIGNARTIH PDSRPVHIDT 1800 LVEAETRSPS PSDGVNKPAS EDQKRQLRNS LVKISSEMSA AQKKSAPSGG GADGPAGEGE 1860 EKLKKTLDGL YQKRKAVQSE IIALEAADRK TREQERAKRS AVRRKILRDA SIVVTTLSGC 1920 WGDVYSACKE SKGSEAGGLF DAVIIDEAAQ ALEPATLIPL QLLVPRGGRC IMIGDPKQLP 1980 ATVLSRAAAN FNYERSLFER LQRGGLPVTL LSAQYRMHPE IRQFPSAHFY GGLLTDGEGI 2040 SRTSRLVPFH ERPVFGPYVF FDVVDGQERS RGGASSLSND AEATAVFELY QGVRRSYPGE 2100 NLRGRVGIIT PYKQQLEALK RKFREVMGDR AMLDVEFNTV DGFQGREVDV LILSTVRTGG 2160 IGFVADVRRM NVALTRARNS LWIVGNSAAL KRNPHWAALL SDAAGRGLVF EARRPYSALF 2220 TPAKGAKKAL AGPSKATGVN LGSDEGKNVN TLDVQVGSGG KKGEKRPAEL IPLGRSKKPK 2280 TTEASPLSGV KRKPEGGSLE MPVAKASRSD GPESSKVPDV KYTPLVDDSE KAETKVAAAA 2340 DFLKAVETPV AAVSGSVPKG APVDLSKAPK KSILKNALSR LEAAGGALAS LNLPPAPTTF 2400 SAGVSPAKST PGSAVDSVFS RPVEVLRSSP MRPAPLEIPL VRVPSSLRVP DPVIGTKPAY 2460 SRDVFTPPNT NSQQQPAGGV PEAPDLPPGF EQFAKVDAMD FDGAPGFQKR GAANPAAKGP 2520 TGAANQKQEM SVLFQNERIP RESLTEPRNR ELPEELRQDN DGTKEAPTPR GIEPRRAAVE 2580 KSTEARNGKE EDERKRKQAE TLSVEEEKAR RNRENAKRYD EGRRLAERIA RDERLRKENE 2640 RYERQDSKGF REPKERPSKE GDRRERSRER GHDTRGSEVS PRKVGSEPSP RDKDRDTKGS 2700 SKKGSSILSP RERATEASPR ERAPKPKSRA GKSERSPRDG KSEPSPRMSS GWIRDERKDR 2760 ERDSERTGEL SRSDSWKRDE RSREKEDGIR SSRDAPREIV RARGSDRERS REKSRDRGTD 2820 QRSRSVDESP GRRGRQERDR EGPPGKSPRA RDDGERAPKD LGTKGRASVE RSPRGSGKES 2880 RSREVSPKGR RKEEKSQESL KSAKDESGSG GQKSEGSVAV EEKAKVSEGL SSALKTDGVA 2940 GTSGLRSAVQ ARAEGNFAAN QGVGAPGREG LPTAERGLGA NPKSGDSATK DKPRPADDTQ 3000 GGRREEDASR GEQPDRRQSG EGSQRGLDRE DKGPSKSGGS RNYSGERLGG DSRDARRSPE 3060 PDSRTKPIPC RYFPKCDKGD ACRFAHVQGS KPCRFFLMGK CREGEACRFA HPRGEEPGEL 3120 KAIRREPPKG RAEEKAAVTA DDSERKQEGE SRSLKSRSLE KANSLGAATS ELVEPVSKQE 3180 TAAQAGQTKM PEAVGNAGTA APKEKPVPTG TVPTKANDVS ALAERKRLRE EAAALMPAGA 3240 FRSQSARLAP ASVQTAYAMP RSSSDIGRRK TLPLEETRIR GGTHGELPEM EEGEVRVAEE 3300 PGVKEAGELS PAGGVPPVRG AGQGIPPGRA PVHARLSLPG SRVESQRDGE MSPGMRRQPV 3360 VERLGPGGLE ARMEEERMRF EEMRRMAMRE DMHREGGRRQ EIMFEEARRG EMMGAFGGGR 3420 EMLVRDEREM MLEGRETVLR DEREVMQQGR REVMMQGARM LDDERMVLRD ERDFQGSPRD 3480 LQPDLRELLR RRNAQGIPGA QGGNNRPISE RLLGGPFSKR NM

Sequence ? help Back to Top

Protein Sequence Length: 3522 aa Download sequence Send to blast

MAAPQMRKLS LEEAAPQRKD LERRWNLLED AAANGSEDEE TERAKEQWFL DALLFLAKAP  60
LEQHSWCQFS DLSSLALESF YHYYSNPNQA LSLVWQRWCQ ELRSCDSCVH TYQRSKEEPK  120
SKEELREEFD GGPATEELFS VLDRLDQERV SQQLKEIKAL FEAGNYDPEQ SADLIFPTIY  180
EVLNYPAILE DAEVDRLVAP VLSFMDQVHA ISIGEYRPAG IYSLLFHNSP EGRAVATRLA  240
KTTPPFRDGQ ELEIVQPILH RKVALLQQLA GSAAIHVDGG GQLPEEKLAI FGGRPARPTR  300
VQEHLPLWLG LSTFLELLEP AAMLGGLVER HPDVVSTVLN QASEPGNPAF NVALKCLKLL  360
FQGVGYRLWW DTDFTPKVVR STLVSHCNTS RKENLHLTIF QLFEPFLQSL EVDRNTSDEF  420
YDERETLLKF LTKQVANSAS FSGVVKSKGL EVAFRIIQRG YTLVPPMPPS DLTPFWAPPL  480
VASLNNPATQ ETLRTQAVEL MSTIVVFDSS ALCSAVFPPA PGFSGASDLV AYLPGSNATL  540
GPQPSSGQEP LEVLEGQPAE SGWGAEWATL ETAAGSYAKE HFHPPALWQA LFLAAPPVNF  600
PGLLTKAVLW AATRLALLEE AVGLNPDQTA ADGAKDWPFV VVENDGKKVS NVVEASREGR  660
KDLVVLYRRC TAAYLDHLRQ RSVDGDVAVL QALEWETWIA ESLIILLLDP TALIRNADRE  720
VLKYFTADAT LDGGLRTLCA DAPAARAVSE GIFKASEKLL HMGFPKCSRG SQLLCFYASK  780
LLRINSSNEQ DAAEGSTEHV TLWAIACARI AEGLWPLLLR VLEGSRPAAE SFEPGPTAQG  840
LLPVADYLIS ASLFQRLIVH VFEAFVATWP FIRHRALPGA ALGRPSVRGD VSTPGAADVS  900
SPVRARGDVS RAPGFGSPAR TPSVFDLVEG GRLKPPGHQG DEWLVDFVKW GDVTRPAVRR  960
RWMECIELVG CEMVDAGARL PAAARGVVRD LLAPTSSLSD EQRLVLSQFF PHEAPGNLGQ  1020
SALDSLPSRP AHASPPKPAF PLRQPSFETP PRSKAPTASQ SRLTTSFLEG GSPPAPAGFF  1080
QPPPTAVPPK SPAIVIDLEE DDQPLSLRRK EAPRAGNSRR PIDLETESDS KSKSRSDTKT  1140
FVRTPAQTQS AEASTSGRES ADKEASKMAA SLAAFANRAS SRPSPWSRNS DTPGGSRSAA  1200
TPTNRTPPAP NRTSPMYSKR APPRYPQQVK IDSMLSRQRE EEELERVWAA ADGLGGFGSA  1260
GPGKRKTDST EASRKRESDS KPAPVKSPTV PMVPGGSAPQ PERPTNRGGG DEGSSVHSRG  1320
VPVPGPKVPQ LRPAAPRKTM RIELPGEGQT ASARARMRRF GSHAPPGPPP KPDDWYKKIL  1380
AMDFFRVVGT EDADEGLARP PNEGTDRLVQ VPDRFESASQ YAQVFRPLLM EEFKAQLQRV  1440
HDESGSSSNS EMLEVGHFKL LSLARRDDFW DANFVAGEDA ERNVRECSEL DLLLLTKHAP  1500
SKGDPSRIHV LAKVDRRDQR DSKGQRRQCT VLVLKLFLPI NEPRLLKVKQ LLTDGSKWHA  1560
TKLFSMVPQM REFQAMSAFH TLPMVSTLLN PSSAKPRSNS SNPSAIRKLP EPLQKHLLSR  1620
YNESQQAAIA SATDSGGSHN QRLTLIQGPP GTGKTSTIMG ILSALLSGPG GNVTRAERVP  1680
GGLGANRPVK APVKLSEREE SAILTAQAQR AWQQAEEAKE LMAKGEENGN GLAGGVQLGG  1740
EGAPRILLCA QSNAAVDELV ARLLKSGVWG ADGLPVRPSI VRIGNARTIH PDSRPVHIDT  1800
LVEAETRSPS PSDGVNKPAS EDQKRQLRNS LVKISSEMSA AQKKSAPSGG GADGPAGEGE  1860
EKLKKTLDGL YQKRKAVQSE IIALEAADRK TREQERAKRS AVRRKILRDA SIVVTTLSGC  1920
WGDVYSACKE SKGSEAGGLF DAVIIDEAAQ ALEPATLIPL QLLVPRGGRC IMIGDPKQLP  1980
ATVLSRAAAN FNYERSLFER LQRGGLPVTL LSAQYRMHPE IRQFPSAHFY GGLLTDGEGI  2040
SRTSRLVPFH ERPVFGPYVF FDVVDGQERS RGGASSLSND AEATAVFELY QGVRRSYPGE  2100
NLRGRVGIIT PYKQQLEALK RKFREVMGDR AMLDVEFNTV DGFQGREVDV LILSTVRTGG  2160
IGFVADVRRM NVALTRARNS LWIVGNSAAL KRNPHWAALL SDAAGRGLVF EARRPYSALF  2220
TPAKGAKKAL AGPSKATGVN LGSDEGKNVN TLDVQVGSGG KKGEKRPAEL IPLGRSKKPK  2280
TTEASPLSGV KRKPEGGSLE MPVAKASRSD GPESSKVPDV KYTPLVDDSE KAETKVAAAA  2340
DFLKAVETPV AAVSGSVPKG APVDLSKAPK KSILKNALSR LEAAGGALAS LNLPPAPTTF  2400
SAGVSPAKST PGSAVDSVFS RPVEVLRSSP MRPAPLEIPL VRVPSSLRVP DPVIGTKPAY  2460
SRDVFTPPNT NSQQQPAGGV PEAPDLPPGF EQFAKVDAMD FDGAPGFQKR GAANPAAKGP  2520
TGAANQKQEM SVLFQNERIP RESLTEPRNR ELPEELRQDN DGTKEAPTPR GIEPRRAAVE  2580
KSTEARNGKE EDERKRKQAE TLSVEEEKAR RNRENAKRYD EGRRLAERIA RDERLRKENE  2640
RYERQDSKGF REPKERPSKE GDRRERSRER GHDTRGSEVS PRKVGSEPSP RDKDRDTKGS  2700
SKKGSSILSP RERATEASPR ERAPKPKSRA GKSERSPRDG KSEPSPRMSS GWIRDERKDR  2760
ERDSERTGEL SRSDSWKRDE RSREKEDGIR SSRDAPREIV RARGSDRERS REKSRDRGTD  2820
QRSRSVDESP GRRGRQERDR EGPPGKSPRA RDDGERAPKD LGTKGRASVE RSPRGSGKES  2880
RSREVSPKGR RKEEKSQESL KSAKDESGSG GQKSEGSVAV EEKAKVSEGL SSALKTDGVA  2940
GTSGLRSAVQ ARAEGNFAAN QGVGAPGREG LPTAERGLGA NPKSGDSATK DKPRPADDTQ  3000
GGRREEDASR GEQPDRRQSG EGSQRGLDRE DKGPSKSGGS RNYSGERLGG DSRDARRSPE  3060
PDSRTKPIPC RYFPKCDKGD ACRFAHVQGS KPCRFFLMGK CREGEACRFA HPRGEEPGEL  3120
KAIRREPPKG RAEEKAAVTA DDSERKQEGE SRSLKSRSLE KANSLGAATS ELVEPVSKQE  3180
TAAQAGQTKM PEAVGNAGTA APKEKPVPTG TVPTKANDVS ALAERKRLRE EAAALMPAGA  3240
FRSQSARLAP ASVQTAYAMP RSSSDIGRRK TLPLEETRIR GGTHGELPEM EEGEVRVAEE  3300
PGVKEAGELS PAGGVPPVRG AGQGIPPGRA PVHARLSLPG SRVESQRDGE MSPGMRRQPV  3360
VERLGPGGLE ARMEEERMRF EEMRRMAMRE DMHREGGRRQ EIMFEEARRG EMMGAFGGGR  3420
EMLVRDEREM MLEGRETVLR DEREVMQQGR REVMMQGARM LDDERMVLRD ERDFQGSPRD  3480
LQPDLRELLR RRNAQGIPGA QGGNNRPISE RLLGGPFSKR NM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mzn_A	4e-63	1892	2206	390	695	Helicase SEN1,Helicase SEN1
6i59_A	4e-63	1892	2206	390	695	Helicase SEN1

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	2689	2694	PRDKDR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A1Y1IHE5	0.0	A0A1Y1IHE5_KLENI; Protein with P-loop containing nucleoside triphosphate hydrolase domain