PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID kfl01244_0020p
Organism
Klebsormidium flaccidum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Klebsormidiophyceae; Klebsormidiales; Klebsormidiaceae; Klebsormidium
Family C2H2
Protein Properties Length: 553aa    MW: 58119.9 Da    PI: 8.2422
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
kfl01244_0020pgenomeKFGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00039471493123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ Cg++F  + ++  H+  H
  kfl01244_0020p 471 HQCKRCGRRFAERTEYSAHLDWH 493
                     79*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5139135.1588139IPR006569CID domain
SuperFamilySSF484646.28E-319137IPR008942ENTH/VHS
Gene3DG3DSA:1.25.40.901.3E-3610145IPR008942ENTH/VHS
SMARTSM005829.1E-2611136IPR006569CID domain
CDDcd035621.64E-2416124No hitNo description
PfamPF048183.7E-964123IPR006903RNA polymerase II-binding domain
PROSITE profilePS5015710.221471498IPR007087Zinc finger, C2H2
PROSITE patternPS000280473493IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006378Biological ProcessmRNA polyadenylation
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MAGGAGEGAA ELVAGYQREL AELTYNSKPI ITSLTILADE NKHASAAIAA CICRHILQAA  60
PAYKLPALYL LDSICKNLRG VDYVAHFRPQ IVHVFTSAYL QVAPAQRQAL KHLFRTWTDG  120
RIFDLEALQS IDNELARIDA EAPPARTTST PPSADPRRAR PTSALPVALG HEIHVNPKLR  180
EGPFPRANAD AALPLGGTLP AAPPLPPLPA VPLQPPVAPL RQYPEHGLAH EESLRRKRKG  240
GGSKRRRGSR GGERDRGPPA REPPPWPLPG AGPPRQETEY PATPAIAQHA PLSEGPPPGY  300
GPPLAAPVAV APSPVSAPSA EAFQQAEQLL AALHSLLPTA AAPPAAPTPP LPPGPPPRPR  360
TPPPPGFPPA PQASGTSTPP PPTVAPPPPP LDLQQLTLLS SLLAAQIQPP PPPGPAPPRP  420
AAAPPASIAA PGPAVLDAEA GTEEVGRAFV AEELRVRREG VVAALYSAFP HQCKRCGRRF  480
AERTEYSAHL DWHFQQNKRR RERKTASRPW FHPADDWGGS PEGGPGPDER EAGGGEEAAA  540
AGVAEESAAV PAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sz9_A2e-16121428142PCF11 protein
1sz9_B2e-16121428142PCF11 protein
1sz9_C2e-16121428142PCF11 protein
1sza_A2e-16121428142PCF11 protein
1sza_B2e-16121428142PCF11 protein
1sza_C2e-16121428142PCF11 protein
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234246RRKRKGGGSKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1Y1IQ010.0A0A1Y1IQ01_KLENI; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP509433