PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00019-augustus-gene-1.39-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 515aa    MW: 57291.3 Da    PI: 6.5052
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00019-augustus-gene-1.39-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.60.000254114431855
                                                    HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                    +++  L++++ +      +K + a++L +A++YIk Lq
  maker-scaffold00019-augustus-gene-1.39-mRNA-1 411 DRITALQQIVSPF-----GKTDTASVLYEAIQYIKFLQ 443
                                                    6788888888887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.188393442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-9408451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-10408459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-4411447No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MAEECIESSV ATSSSTPTNW WDFPGASSLP AWNNNPNSWH HQNPNSNSSC EEDVSMSTSF  60
TNASNHSGLT VESSRRLAEP ASSNDLIGEH ASDNSLWSHV LLSVGSNGEM QNNQDVEENF  120
VDALSSKSMS TGMFEPACDY LKKLDNSWEF TNSTSFNNFE KHINGFNDSV LDNERLNKLS  180
NLVSTWSIAP PDPDVNRQFD PQTCNISLSS SMDHYSQPDL CHMKHAFADS TSCDLGTTRN  240
SSLFPCYSHD MKVENERRET EAPVALLRRS FNNNGVGYQI GANSPLMGDN PRSYFYGMPN  300
SSSCRNIKSF ADVISFSNRM GKPLMDIHAP NNCFKSLNTS DYKKQGLQTS MLRNSSCSMQ  360
TRNNAKGQGI ANEGKRKRSE DGSESVLKKP KQESPTASSV KVQAPKVKLG DRITALQQIV  420
SPFGKTDTAS VLYEAIQYIK FLQEQVQLLS NPYMKTNSHK DPWGGLDRKD KGDTKLDLRS  480
RGLCLVPTSC TPQIYRENTG SDYWSTPTYR GCLYR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374390KRKRSEDGSESVLKKPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918807.10.0transcription factor bHLH111 isoform X1
TrEMBLA0A2N9F6Z70.0A0A2N9F6Z7_FAGSY; Uncharacterized protein
STRINGVIT_01s0010g02070.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101162629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.15e-73bHLH family protein