PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00027-augustus-gene-1.27-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family WRKY
Protein Properties Length: 232aa    MW: 26306.6 Da    PI: 8.9995
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00027-augustus-gene-1.27-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.2e-32155213159
                                                    ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                                           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                                    ldDgy+WrKYGqK+vk++++prsYYrCt+ +C+vkk+ver aedp++v++tYeg+H h+
  maker-scaffold00027-augustus-gene-1.27-mRNA-1 155 LDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHIHS 213
                                                    59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-33140213IPR003657WRKY domain
SuperFamilySSF1182901.44E-28147214IPR003657WRKY domain
PROSITE profilePS5081129.471150215IPR003657WRKY domain
SMARTSM007746.1E-37155214IPR003657WRKY domain
PfamPF031063.0E-25156212IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1901141Biological Processregulation of lignin biosynthetic process
GO:1904369Biological Processpositive regulation of sclerenchyma cell differentiation
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MSTTSQTMLN QGLFEDQEVP TQMGYYPFSS NLTLPAPLGC HQSLKVFSNT LPPSLASDAP  60
STNLNGTLLS SPTTKHREDT TCDFGGPQLL SLHRSSTNLW AWNGDVGECL STKRGAGGDD  120
NHLGVSTLKM KKIKARRKVR EPRFCFKTMS DVDVLDDGYK WRKYGQKVVK NTQHPRSYYR  180
CTQDNCRVKK RVERLAEDPR MVITTYEGRH IHSPSHDMED SQTPSQLNNF FW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-26146212874Probable WRKY transcription factor 4
2lex_A2e-26146212874Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879109.11e-174probable WRKY transcription factor 13
SwissprotQ9SVB71e-60WRK13_ARATH; Probable WRKY transcription factor 13
TrEMBLA0A061DJ421e-131A0A061DJ42_THECC; WRKY DNA-binding protein 13
STRINGEOX923221e-132(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40793361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39410.14e-63WRKY DNA-binding protein 13