PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00038-augustus-gene-0.37-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 246aa    MW: 28111 Da    PI: 5.1319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00038-augustus-gene-0.37-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.5e-135799754
                                                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                                            HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                                                     Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  maker-scaffold00038-augustus-gene-0.37-mRNA-1 57 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 99
                                                   57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6985099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.9E-1851114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.25E-1353104No hitNo description
SMARTSM003534.5E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1756114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.0E-115799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MENMSEEYKQ YKHYWETNMF LQTEELDSWG LDEAFSGYYD SSSPDGAASS AASKNIVSER  60
NRRKKLNERL FALRAVVPNI SKMDKASIIK DAIDYIQELH DQEKRIQAEI MELESGKLKK  120
NPGYDFDEQE LPVLLRSKKK KTDQFYDSGG SRISPIEVLE LRATYMGEKT VVVSLTCSKR  180
TDTMVKLCEV FESLKLKIIT ANITAFSGRL VKTVFVEADE EEKDHLKIRI ETAIAALNDP  240
QSPMSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1455115969Transcription factor MYC2
5gnj_B5e-1455115969Transcription factor MYC2
5gnj_E5e-1455115969Transcription factor MYC2
5gnj_F5e-1455115969Transcription factor MYC2
5gnj_G5e-1455115969Transcription factor MYC2
5gnj_I5e-1455115969Transcription factor MYC2
5gnj_M5e-1455115969Transcription factor MYC2
5gnj_N5e-1455115969Transcription factor MYC2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX987553e-81X98755.1 Quercus petraea/Quercus robur mixed clone library DNA microsatellite ga36.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023900547.10.0transcription factor bHLH35
SwissprotQ2HIV91e-95BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A2N9G4R61e-167A0A2N9G4R6_FAGSY; Uncharacterized protein
STRINGXP_009348093.11e-155(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.18e-89bHLH family protein