PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00048-snap-gene-1.53-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family GRAS
Protein Properties Length: 125aa    MW: 14157.3 Da    PI: 5.125
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00048-snap-gene-1.53-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS71.12.1e-223912261147
                                       GRAS  61 ykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaL 128
                                                yk++++ + ++k+++e+ + ++++ evsP+lkf+h+taNq Ilea++g+++vH   fdi +G+QWp+L
  maker-scaffold00048-snap-gene-1.53-mRNA-1  39 YKSITALQMEHKSVAEH-TNFQMLKEVSPYLKFAHFTANQVILEATQGDHEVHSFIFDIFEGVQWPPL 105
                                                56666677765556666.5569********************************************** PP

                                       GRAS 129 lqaLasRpegppslRiTgv 147
                                                + + a   +++  l++T++
  maker-scaffold00048-snap-gene-1.53-mRNA-1 106 MAEVAM--GKSTFLKVTAI 122
                                                *****9..7888*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.7991125IPR005202Transcription factor GRAS
PfamPF035147.4E-2039122IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 125 aa     Download sequence    Send to blast
MQESSQTDPL LIGSEAVKEQ NWLLKERGLA IFFTQGLNYK SITALQMEHK SVAEHTNFQM  60
LKEVSPYLKF AHFTANQVIL EATQGDHEVH SFIFDIFEGV QWPPLMAEVA MGKSTFLKVT  120
AIIVD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018827457.12e-44PREDICTED: nodulation-signaling pathway 2 protein-like
RefseqXP_018855081.19e-45PREDICTED: nodulation-signaling pathway 2 protein-like, partial
TrEMBLA0A2I4F7336e-43A0A2I4F733_JUGRE; nodulation-signaling pathway 2 protein-like
TrEMBLA0A2I4HFY32e-43A0A2I4HFY3_JUGRE; nodulation-signaling pathway 2 protein-like
STRINGPOPTR_0019s02540.11e-36(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131482130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14920.11e-15GRAS family protein