PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00054-augustus-gene-1.42-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 307aa    MW: 33961.1 Da    PI: 8.7001
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00054-augustus-gene-1.42-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding431e-1394138347
                                                    SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                                Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                                    +WT++E++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky
  maker-scaffold00054-augustus-gene-1.42-mRNA-1  94 PWTEDEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 138
                                                    8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.0887143IPR017930Myb domain
SuperFamilySSF466891.72E-1689144IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-1790141IPR006447Myb domain, plants
SMARTSM007177.6E-1091141IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-1093138IPR009057Homeodomain-like
PfamPF002496.0E-1194138IPR001005SANT/Myb domain
CDDcd001676.33E-994139No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEMKSDTCGN GEIMLFGVRV VVDSMRKSVS MNNLSQYEQP QHQPQPPHQD GEASNNSSNK  60
IQSKDDDAAG YASADDAVPS SRATRERERK RGVPWTEDEH KLFLLGLQKV GKGDWRGISR  120
NFVKTRTPTQ VASHAQKYFL RRTNINRRRR RSSLFDITTD TVTAIPMEDE PGHNNQDNVS  180
NSHSLPPPPP ETCNFSGYPM MRAFPMSVGP AVVPVPIENP MENLSLGQGN LDINASSKLV  240
RPIPIHTATH AATITDLNLN WKSAMDPSPL TLKLSLTSDQ RESPSRPPSA FQAMSNFNKG  300
DSIITVA
Functional Description ? help Back to Top
Source Description
UniProtBinds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00631PBMTransfer from PK23829.1Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023902305.10.0transcription factor MYB1R1
SwissprotQ2V9B01e-73MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLA0A2N9EII51e-159A0A2N9EII5_FAGSY; Uncharacterized protein
STRINGEMJ106091e-122(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42483154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74840.24e-51MYB_related family protein
Publications ? help Back to Top
  1. Shin D, et al.
    Expression of StMYB1R-1, a novel potato single MYB-like domain transcription factor, increases drought tolerance.
    Plant Physiol., 2011. 155(1): p. 421-32
    [PMID:21030505]