PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00079-snap-gene-0.31-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB_related
Protein Properties Length: 828aa    MW: 92998.6 Da    PI: 5.0522
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00079-snap-gene-0.31-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.52.1e-10764818146
                                                TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHH CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqk 46 
                                                r +WT+eE+e+l+++v+++ ++      Wk I +  g      Rt  ++k++w++
  maker-scaffold00079-snap-gene-0.31-mRNA-1 764 RVPWTAEEEERLKEGVQKFTNPndsniPWKNILEFGGnvfqSDRTTIDLKDKWRN 818
                                                789**************************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.87E-10549608IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.1E-9555607IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS500168.885558607IPR019787Zinc finger, PHD-finger
SMARTSM002491.9E-8560605IPR001965Zinc finger, PHD-type
PROSITE patternPS013590561604IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500907.155761820IPR017877Myb-like domain
SuperFamilySSF466898.97E-11761822IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.3E-11761826IPR009057Homeodomain-like
SMARTSM007174.9E-7763822IPR001005SANT/Myb domain
PfamPF002492.4E-7764818IPR001005SANT/Myb domain
CDDcd116601.26E-13765821No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 828 aa     Download sequence    Send to blast
MDENLYNRAS ILPWIWVIEA LARFKQVDVS VLHAKGGGLG ILHDFFVSDL IELVPELPDD  60
LGKNMREMLA LRCLECLFDP SNGVRNGDSS TLDSKVGLDF SKSCEDVLQH ILHETSLSDL  120
KIAGPELLKW DVHPFIVHKR AGMPKLALQQ LKDSILEGIH PYADSLKEWS GLTLTSAGDG  180
IPMNNGNQNA LTHRVNGSCF DTQHMGAKGN FIPTMLENGN QPLKNDPCNR NLLLSKRGRN  240
RSATENMVGD FHENENTLND VDNFHINAKK QKQCPSSSIQ SIEENPVPLH GTEPLEDSSA  300
RAMSVSEREG CDLAKDQIGT LKEGRVLEDG HDEHTVSVRC GHNSDDEFHH NQSETSDNAT  360
MICQDPSADE PCKNIAVNKD IDDSEHCVEP RPLIGPYSAT MMVQAMSVDE VKDDSEHCAE  420
PRTSSGPLLN KTLEDEFHHN HQKISVDETK DVSDNCAEPR TSSVPLLNKT LENESQYNCR  480
HDFQLKAPYA ASLDGSQQNI ITNEAEEVMD RCCEAETSND SCECHNYKID VSKKKLEFLR  540
HQCKYSHDSL ASAGCTEHNF CVRCNEGGQL LVCNTRNCPL VVHENCLGFS SRFDDNGNFY  600
CPFCVYSLAI SEYLEAKKKA SLAETELNKF IHMDLKHQPK ELMQQAEPSV SCDNVNATLR  660
EEEATVTTGT LNEFTNGGQA HREENTDVIP VNQRQAEEGF HQVVSGQQIA DPPQEPVWAL  720
NIDGEGTSGD ETNKSIVFNY SRRLRRRESY HTYPVLPPLL RRKRVPWTAE EEERLKEGVQ  780
KFTNPNDSNI PWKNILEFGG NVFQSDRTTI DLKDKWRNMC KRSPKSKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1744763RRRESYHTYPVLPPLLRRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023904296.10.0uncharacterized protein LOC112016036 isoform X1
RefseqXP_023904297.10.0uncharacterized protein LOC112016036 isoform X1
TrEMBLA0A2N9EMB70.0A0A2N9EMB7_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.21e-07MYB_related family protein