PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00090-snap-gene-1.53-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family FAR1
Protein Properties Length: 122aa    MW: 14427.4 Da    PI: 9.6576
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00090-snap-gene-1.53-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.32.1e-122796272
                                       FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkke 71
                                                Yn++A ++GF++rk k ++ +  ++i++++f Cskeg++ +e    +++  +r etrtgCk +   +++
  maker-scaffold00090-snap-gene-1.53-mRNA-1 27 LYNNFALRMGFNIRKGKPRYYNGMKNIKQHEFLCSKEGFKLDEIFC-KEKYLKRLETRTGCKWSTAFTED 95
                                               6*******************9999******************9988.89999**********88777666 PP

                                       FAR1 72 k 72
                                                
  maker-scaffold00090-snap-gene-1.53-mRNA-1 96 F 96
                                               5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-92798IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MFVERLENSD DNFLNKVVHN AGEAYALYNN FALRMGFNIR KGKPRYYNGM KNIKQHEFLC  60
SKEGFKLDEI FCKEKYLKRL ETRTGCKWST AFTEDFFTTE FKSSWRSEST NHVLNGIAKK  120
NN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060781.18e-40protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2N9ET886e-31A0A2N9ET88_FAGSY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3607938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80010.17e-07FAR1-related sequence 8