PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00091-augustus-gene-1.38-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 294aa    MW: 33442.4 Da    PI: 6.5931
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00091-augustus-gene-1.38-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-131470148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.........TTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.........kgRtlkqcksrwqkyl 48
                                                   rg+WT+ Ed ll ++++ +G g+W++ ++            + R++k+c++rw++yl
  maker-scaffold00091-augustus-gene-1.38-mRNA-1 14 RGPWTPKEDTLLMNYIEAHGEGHWRSLPKNADlvfffvlegLLRCGKSCRLRWLNYL 70
                                                   89*****************************************************97 PP
2Myb_DNA-binding49.21.2e-1576121148
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    rg+  ++E++l+++++ +lG++ W++Ia++++ gRt++++k++w+++l
  maker-scaffold00091-augustus-gene-1.38-mRNA-1  76 RGNIGPDEEDLIIRLHSLLGNR-WSLIAARLP-GRTDNEIKNYWNSHL 121
                                                    677789****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.987970IPR017930Myb domain
SuperFamilySSF466892.92E-2711117IPR009057Homeodomain-like
SMARTSM007173.7E-91372IPR001005SANT/Myb domain
PfamPF002492.7E-121470IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-211577IPR009057Homeodomain-like
CDDcd001674.35E-71670No hitNo description
PROSITE profilePS5129425.07371125IPR017930Myb domain
SMARTSM007174.7E-1575123IPR001005SANT/Myb domain
PfamPF002491.5E-1476121IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2578125IPR009057Homeodomain-like
CDDcd001677.80E-1181121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGRAPCCSKI GMNRGPWTPK EDTLLMNYIE AHGEGHWRSL PKNADLVFFF VLEGLLRCGK  60
SCRLRWLNYL RPDIKRGNIG PDEEDLIIRL HSLLGNRWSL IAARLPGRTD NEIKNYWNSH  120
LSKKVKNSAK NVQNNHKGAS KCVQVPNRRQ KKNDDQDSSN GEMIIKTKVH QPKAVRVSPF  180
SITRNNSIES MVSGSSSNAD GNNNNNGLDH AEALNCPWLW SDHKDADING GEALVCENNH  240
SDFVNDYDDA CYFSCQNYSE TTENMLDKIY EEYQQLLEDE NELPLDSFVK SLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-251212525128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023910582.10.0transcription repressor MYB6-like
SwissprotQ9SJX81e-59MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A2N9HTQ51e-145A0A2N9HTQ5_FAGSY; Uncharacterized protein
STRINGPOPTR_0003s14420.12e-96(Populus trichocarpa)
STRINGXP_002518878.11e-96(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.16e-62myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]