PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00096-augustus-gene-0.29-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 428aa    MW: 47324.6 Da    PI: 5.7659
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00096-augustus-gene-0.29-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding483e-155097148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +grWT +Ede+l ++++  G g+W+t ++  g+ R++k+c++rw +yl
  maker-scaffold00096-augustus-gene-0.29-mRNA-1 50 KGRWTVQEDEILTNYIQANGEGSWRTLPKNAGLLRCGKSCRLRWINYL 97
                                                   79******************************99************97 PP
2Myb_DNA-binding52.41.2e-16103148148
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    rg+ T+eE+e +v+++  lG++ W++Ia  ++ gRt++++k++w+++l
  maker-scaffold00096-augustus-gene-0.29-mRNA-1 103 RGNITPEEEETIVKLHSVLGNR-WSLIAGSLP-GRTDNEIKNYWNSHL 148
                                                    7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-2041100IPR009057Homeodomain-like
PROSITE profilePS5129414.3784597IPR017930Myb domain
SuperFamilySSF466891.41E-2747144IPR009057Homeodomain-like
SMARTSM007171.1E-104999IPR001005SANT/Myb domain
PfamPF002491.1E-125097IPR001005SANT/Myb domain
CDDcd001671.66E-75297No hitNo description
PROSITE profilePS5129425.07598152IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.7E-25101152IPR009057Homeodomain-like
SMARTSM007173.9E-15102150IPR001005SANT/Myb domain
PfamPF002492.7E-14103148IPR001005SANT/Myb domain
CDDcd001672.40E-10107148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MSISPTSLSS SLPINFTDNN PAESSLSFSF APESTEMGRA PCCEKVGLKK GRWTVQEDEI  60
LTNYIQANGE GSWRTLPKNA GLLRCGKSCR LRWINYLRAD LKRGNITPEE EETIVKLHSV  120
LGNRWSLIAG SLPGRTDNEI KNYWNSHLSR KLYSFTKSTN ESLSTVINMA ATRKGRDGRG  180
RIRRLTTKKH KNTASNIVGM SPLQSGTTAT DDEVLDPRAQ EKARVPGFTF ARQAEKNPMM  240
GLFGSGAPEQ QGEVKRGPGV HGSCMDTTVI KLGQAGPNKE GLKSEAVLCP SQKRESEGLG  300
PYEWFDGEIM HPGYVLESGV QNTGETVAHK KQRENGVLGI NSEEERVNNR ALKTEKETTS  360
EEKESSVISS NVADGEWNTC SSSINSSFDY EWLDWDWVGG AECHNQYELW DEGENMTVCL  420
WGTGNGED
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-22481525108B-MYB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895412.10.0transcription factor MYB111-like
TrEMBLA0A2N9EZ951e-180A0A2N9EZ95_FAGSY; Uncharacterized protein
STRINGXP_008223335.11e-103(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.12e-74myb domain protein 12