PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00133-augustus-gene-1.20-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 644aa    MW: 73313.9 Da    PI: 4.672
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00133-augustus-gene-1.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012305326122
                                                    EEETTTTEEESSHHHHHHHHHH CS
                                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirt 22 
                                                    + C  Cgk F++  + k+H ++
  maker-scaffold00133-augustus-gene-1.20-mRNA-1 305 FYCVVCGKKFKSDKQWKNHEQS 326
                                                    78*****************876 PP
2zf-C2H2110.0014615633220
                                                    EETTTTEEESSHHHHHHHH CS
                                        zf-C2H2   2 kCpdCgksFsrksnLkrHi 20 
                                                    +C  Cg+ F ++  L++H+
  maker-scaffold00133-augustus-gene-1.20-mRNA-1 615 TCDTCGEEFESRTKLHKHL 633
                                                    6*****************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1101.9E-23379IPR001623DnaJ domain
SuperFamilySSF465654.32E-235104IPR001623DnaJ domain
SMARTSM002713.4E-22769IPR001623DnaJ domain
PROSITE profilePS5007619.414877IPR001623DnaJ domain
CDDcd062571.15E-17866IPR001623DnaJ domain
PfamPF002266.5E-21974IPR001623DnaJ domain
PRINTSPR006254.2E-151028IPR001623DnaJ domain
PRINTSPR006254.2E-152843IPR001623DnaJ domain
PRINTSPR006254.2E-154969IPR001623DnaJ domain
PROSITE patternPS0063605473IPR018253DnaJ domain, conserved site
SuperFamilySSF576672.9E-13294345No hitNo description
SMARTSM004511.8E-4302336IPR003604Zinc finger, U1-type
PfamPF121713.7E-10305330IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.77305329IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.037305334IPR007087Zinc finger, C2H2
PROSITE patternPS000280307329IPR007087Zinc finger, C2H2
PROSITE profilePS501579.12614643IPR007087Zinc finger, C2H2
SMARTSM003555.1614638IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280616638IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MESAAKRCHY EVLGLSRDCA ADEIRSAYKK LALQRHPDKL VQSGLSHAEA TAQFQELAQA  60
YEVLSDPKER AWYDSHRSQI LFSDLNSNSV APNSAIPNLF SFFSNTVFSG YSDSGRGFYK  120
VYSDLFDKIY ANEINFARKL GLGLIKEAPL MGNLESPYVQ VTAFYNYWLG FCTVMDFCWA  180
DQYDAMAGVN RKSRRVMEEE NKKVRKKARR EYNETVRGLA EFVKKRDKRV IDMAVKRNLE  240
MERKKEEERE RKKRLEKERI EKARAYVEPE WTRVDEEDLE GDGKGMEEEE EEEEEEEEER  300
KRKEFYCVVC GKKFKSDKQW KNHEQSKKHK EKVAEFRDSL GDEEEEGDQD IGEEEERVAD  360
EVGERIRDEL EIGDKDEEDE ENGIGFHDVE DTNEVGGGEE SDGDGVNDDD DDDDDGGGDD  420
DDDDEMGVLE AMVAGRKSRK NVGSRGEAKV ASWSEVRVED ESDGVELPKS RNNVGSRREE  480
KAAAWSEVRV EDESDGVEFM EYNNTKSKRK NRRSKKNGGE AMRDATNEIH RQSEESESNG  540
LDGSNLEEEE SSSHSVSENV SNGNVKGDDQ LARDKKSSNQ NVNKKGTGKK DTIAKSKNSS  600
KGKKAKATSK NSSNTCDTCG EEFESRTKLH KHLGDSGHAT LKYR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201209KKVRKKARR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023924595.10.0DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A2I4EZM70.0A0A2I4EZM7_JUGRE; DNAJ protein JJJ1 homolog
STRINGXP_008240022.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65511922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-143DNAJ heat shock N-terminal domain-containing protein