PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00134-augustus-gene-1.25-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 337aa    MW: 37749.5 Da    PI: 6.2228
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00134-augustus-gene-1.25-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.15.6e-201461148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+WT+eEde+lv++++++G g+W++ ++  g++R++k+c++rw +yl
  maker-scaffold00134-augustus-gene-1.25-mRNA-1 14 KGPWTPEEDEKLVQYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                                                   79********************************************97 PP
2Myb_DNA-binding54.13.7e-1767112148
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    rg++++eE++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
  maker-scaffold00134-augustus-gene-1.25-mRNA-1  67 RGKFSQEEEQSILHLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                                                    89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-27564IPR009057Homeodomain-like
PROSITE profilePS5129419.404961IPR017930Myb domain
SuperFamilySSF466892.06E-3211108IPR009057Homeodomain-like
SMARTSM007171.6E-161363IPR001005SANT/Myb domain
PfamPF002491.4E-181461IPR001005SANT/Myb domain
CDDcd001671.78E-131661No hitNo description
PROSITE profilePS5129426.65262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.4E-2765117IPR009057Homeodomain-like
SMARTSM007174.2E-1666114IPR001005SANT/Myb domain
PfamPF002495.5E-1667112IPR001005SANT/Myb domain
CDDcd001673.44E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTPE EDEKLVQYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SQEEEQSILH LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHQPRT DLFSSLPHLL ALANLRDLMV DHHPLDEQAM RLQADAVQLA KLQYLQYLLQ  180
SATSITTNSY GQNDLTDMEA LNLLSSIPAF KENPVLNSSH VENSSSFSPG STTTFQPLHH  240
PSLLAHLSDP QVPFNFQTSL NSEMGQGCNF TMISQGDNLQ DDSSLVFPFP TPVISTLTDD  300
MSLSNPGDAS SSTSSYVGAS SFWPELFFED PIMHEIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00180DAPTransfer from AT1G34670Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023918909.10.0transcription factor MYB93
SwissprotQ9S9Z21e-120MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2N9F9B00.0A0A2N9F9B0_FAGSY; Uncharacterized protein
STRINGPOPTR_0005s17080.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.11e-104myb domain protein 93
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]