PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00145-augustus-gene-1.20-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family DBB
Protein Properties Length: 206aa    MW: 22238.3 Da    PI: 5.9181
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00145-augustus-gene-1.20-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.78.6e-07447542
                                       zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                                                    C+ +e  e++  C  ++  lC  C ++ H        H++vpl
  maker-scaffold00145-augustus-gene-1.20-mRNA-1  4 QCNVCEAAEATVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47
                                                   7******99*********************66899999999986 PP
2zf-B_box284.7e-095393337
                                       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                                                   +++C+ ++e    +fC +++ llC++C +++H        H
  maker-scaffold00145-augustus-gene-1.20-mRNA-1 53 PPNCDICQETAGYFFCLEDRALLCRKCDVAIHTAniyvsaH 93
                                                   589******99*********************555666666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.651147IPR000315B-box-type zinc finger
CDDcd000214.07E-8347No hitNo description
PfamPF006432.7E-5447IPR000315B-box-type zinc finger
SMARTSM003361.6E-10447IPR000315B-box-type zinc finger
SMARTSM003363.0E-135198IPR000315B-box-type zinc finger
PfamPF006431.8E-65493IPR000315B-box-type zinc finger
PROSITE profilePS501198.7595698IPR000315B-box-type zinc finger
CDDcd000214.25E-85698No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MKIQCNVCEA AEATVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSTS HMPPNCDICQ  60
ETAGYFFCLE DRALLCRKCD VAIHTANIYV SAHQRFLLTG VKVGLEPTDP VASSSSVKSQ  120
SGEENLETKS HSVSRRDASL PMAVQCNKVL PIPVGGVGDF AAPKVPYSGG NVAGSILQWP  180
IDEYLGLPEF NQSYGYMDNG SSKVWL
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023888188.11e-139B-box zinc finger protein 22
SwissprotQ9SYM22e-75BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2N9FRU01e-120A0A2N9FRU0_FAGSY; Uncharacterized protein
STRINGXP_006442350.11e-103(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45663453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-76light-regulated zinc finger protein 1