PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00173-augustus-gene-1.22-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

YABBY

Protein Properties

Length: 182aa MW: 20180.8 Da PI: 8.4123

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00173-augustus-gene-1.22-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	212	2e-65	4	153	2	170
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshlde 65 d++ sse+vCyv+CnfCntilavsvP +slf++vtvrCGhC++llsvn+ ++q+++ ++ maker-scaffold00173-augustus-gene-1.22-mRNA-1 4 DMMASSERVCYVHCNFCNTILAVSVPCSSLFNIVTVRCGHCANLLSVNMGATVQAVPPQDP--- 64 57889********************************************9999999885... PP YABBY 66 slkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekrqrvPsay 129 ++++++s + ++s+ ++ s+++ ++e pr+ p irPPekrqrvPsay maker-scaffold00173-augustus-gene-1.22-mRNA-1 65 ------------QKQHISSDDCGSSSKCNKFSAFE---TVEHEQPRMAP-IRPPEKRQRVPSAY 112 ............45566666666666666666644...45677788888.9********* PP YABBY 130 nrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 nrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl maker-scaffold00173-augustus-gene-1.22-mRNA-1 113 NRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 153 *************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.1E-72	8	153	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-8	95	146	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.5E-5	101	147	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MSLDMMASSE RVCYVHCNFC NTILAVSVPC SSLFNIVTVR CGHCANLLSV NMGATVQAVP 60 PQDPQKQHIS SDDCGSSSKC NKFSAFETVE HEQPRMAPIR PPEKRQRVPS AYNRFIKEEI 120 QRIKASNPDI SHREAFSTAA KNWAHFPHIH FGLKLDGNNK QGKLDQALAG TDQGSQKSNG 180 FY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023929543.1	1e-135	putative axial regulator YABBY 2
Swissprot	Q9XFB0	2e-84	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	K9P2Z3	1e-122	K9P2Z3_9ROSI; YABBY2-like transcription factor YAB2
STRING	EOY33226	1e-107	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	9e-87	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]