PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00199-snap-gene-1.22-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 268aa    MW: 30647.4 Da    PI: 9.9083
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00199-snap-gene-1.22-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.2e-182065147
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                               rg W + Ede+l ++v+q+G+ +W+ Ia ++  gR++k+c++rw++ 
  maker-scaffold00199-snap-gene-1.22-mRNA-1 20 RGHWKPAEDEKLQQLVEQHGPQNWNFIADHLE-GRSGKSCRLRWYNQ 65
                                               899*****************************.************96 PP
2Myb_DNA-binding47.25.1e-1572114145
                                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                                ++++TteE+++l+ a++ +G++ W+ Iar++  gRt++ +k+ ++
  maker-scaffold00199-snap-gene-1.22-mRNA-1  72 KKPFTTEEEQRLLAAHRIYGNK-WAFIARYFK-GRTDNTVKNQYH 114
                                                689*******************.********9.*********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.3051570IPR017930Myb domain
SuperFamilySSF466894.4E-2917113IPR009057Homeodomain-like
SMARTSM007171.6E-151968IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-262173IPR009057Homeodomain-like
CDDcd001677.28E-142364No hitNo description
PfamPF139216.5E-192383No hitNo description
PROSITE profilePS5129416.37971121IPR017930Myb domain
SMARTSM007171.1E-1271119IPR001005SANT/Myb domain
CDDcd001675.58E-974114No hitNo description
Gene3DG3DSA:1.10.10.608.2E-1974119IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MKKSRSSTSS DSESGKRCHR GHWKPAEDEK LQQLVEQHGP QNWNFIADHL EGRSGKSCRL  60
RWYNQLDPNI NKKPFTTEEE QRLLAAHRIY GNKWAFIARY FKGRTDNTVK NQYHIMMARR  120
KRERFSVQGH RSHSKFQNLQ KLVTSSMSSL HSLSFSQSKM TTDSLSVDIF GGGRKKHLGP  180
SISSSSNETS HDFIVPGIPV VHEVVPQPFR FSNFDGVYES EEMLNLQRLD DNSTACWNLK  240
MASEQDQGDG SIVHKAVPFI DFFGVGIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-28201207107B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023919099.11e-157transcription factor MYB54-like
TrEMBLA0A2N9HU968e-98A0A2N9HU96_FAGSY; Uncharacterized protein
STRINGPOPTR_0007s04140.11e-75(Populus trichocarpa)
STRINGXP_002526637.18e-76(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.15e-61myb domain protein 69