PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

maker-scaffold00219-augustus-gene-1.12-mRNA-1

Organism

Castanea mollissima

Taxonomic ID

60419

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea

Family

C2H2

Protein Properties

Length: 483aa MW: 53544.7 Da PI: 6.2337

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
maker-scaffold00219-augustus-gene-1.12-mRNA-1	genome	THGP	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	131	153	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+Cp+Cg+sF++ ++ +H t+ maker-scaffold00219-augustus-gene-1.12-mRNA-1 131 YECPICGQSFRSEEEVSVHVDTC 153 99*****************9887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.10.20.90	3.4E-9	27	54	No hit	No description
PROSITE profile	PS50157	9.951	131	160	IPR007087	Zinc finger, C2H2
CDD	cd09212	1.53E-20	189	272	No hit	No description
SMART	SM00580	4.6E-21	191	258	IPR018997	PUB domain
SuperFamily	SSF143503	4.32E-18	191	253	IPR018997	PUB domain
Pfam	PF09409	3.8E-17	191	262	IPR018997	PUB domain
SuperFamily	SSF54236	1.27E-14	338	451	IPR029071	Ubiquitin-related domain
Gene3D	G3DSA:3.10.20.90	3.4E-9	355	449	No hit	No description
PROSITE profile	PS50033	10.951	367	451	IPR001012	UBX domain
Pfam	PF00789	8.3E-6	369	418	IPR001012	UBX domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MDDMKDKVKG FMKKVNNPFS SSSSSSGKFK GQGRVLGSSS SSSGPTNPIQ SRPSSQIQNP 60 SPQPRKEPNS VTSNSKPKPF PQKAPTSDHN DRSDLTNDST PNRKPANGFD PFDSMITSGK 120 RSQNGYSLSV YECPICGQSF RSEEEVSVHV DTCVNNSVEP GGSDLPDNGV ESRSELECCI 180 GAFVAGKPSE GSVEVVLKLL RNIVREPENA KFRRIRMSNP KIREAIGEVA GGVELLEFVG 240 FELKEEDGEM WAVMEVPTEA QISLINRATG LLAPQKVEEP QKKEDLQSAT SANVEKQIEP 300 KKVDRQVRVF FSVPESVAAK IELPDSFYNL SLEEIKREAE MRRKKMAESQ LLIPKSFKEK 360 QAKAARRRYR KTVIRIQFPD GVVLQGIFNP WERTSSLYEF VSSALKEPSL EFELLHPVVV 420 KRRVIPHFPA TGETAITLED EDLVPSALIK FKPIETDSVV FTGLCNELLE ICEPLVNDSA 480 VPK

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MDDMKDKVKG FMKKVNNPFS SSSSSSGKFK GQGRVLGSSS SSSGPTNPIQ SRPSSQIQNP  60
SPQPRKEPNS VTSNSKPKPF PQKAPTSDHN DRSDLTNDST PNRKPANGFD PFDSMITSGK  120
RSQNGYSLSV YECPICGQSF RSEEEVSVHV DTCVNNSVEP GGSDLPDNGV ESRSELECCI  180
GAFVAGKPSE GSVEVVLKLL RNIVREPENA KFRRIRMSNP KIREAIGEVA GGVELLEFVG  240
FELKEEDGEM WAVMEVPTEA QISLINRATG LLAPQKVEEP QKKEDLQSAT SANVEKQIEP  300
KKVDRQVRVF FSVPESVAAK IELPDSFYNL SLEEIKREAE MRRKKMAESQ LLIPKSFKEK  360
QAKAARRRYR KTVIRIQFPD GVVLQGIFNP WERTSSLYEF VSSALKEPSL EFELLHPVVV  420
KRRVIPHFPA TGETAITLED EDLVPSALIK FKPIETDSVV FTGLCNELLE ICEPLVNDSA  480
VPK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ifs_A	2e-14	318	451	19	146	Tether containing UBX domain for GLUT4
5ifs_C	2e-14	318	451	19	146	Tether containing UBX domain for GLUT4
5ifw_A	9e-15	318	451	19	146	Tether containing UBX domain for GLUT4
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Functional Description ? help Back to Top
Source	Description
UniProt	Facilitates the interaction of SYP31 and CDC48A, thereby regulating an CDC48A membrane-associated function (Ref.8). Appears to act as a negative regulator mediating the powdery mildew-plant interaction (PubMed:19176722, PubMed:23301616). {ECO:0000269\|PubMed:19176722, ECO:0000269\|PubMed:23301616, ECO:0000269\|Ref.8}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced in response to powdery mildew and by benzothiadiazole (BTH) treatment. {ECO:0000269\|PubMed:19176722}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023921726.1	0.0	plant UBX domain-containing protein 2
Swissprot	Q9ZU93	0.0	PUX2_ARATH; Plant UBX domain-containing protein 2
TrEMBL	A0A2N9J3R5	0.0	A0A2N9J3R5_FAGSY; Uncharacterized protein
STRING	evm.TU.contig_27573.2	0.0	(Carica papaya)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8944	25	29

Publications ? help Back to Top
Suzuki T,Park H,Till EA,Lennarz WJ The PUB domain: a putative protein-protein interaction domain implicated in the ubiquitin-proteasome pathway. Biochem. Biophys. Res. Commun., 2001. 287(5): p. 1083-7 [PMID:11587532] Rancour DM,Park S,Knight SD,Bednarek SY Plant UBX domain-containing protein 1, PUX1, regulates the oligomeric structure and activity of arabidopsis CDC48. J. Biol. Chem., 2004. 279(52): p. 54264-74 [PMID:15498773] Chandran D,Rickert J,Cherk C,Dotson BR,Wildermuth MC Host cell ploidy underlying the fungal feeding site is a determinant of powdery mildew growth and reproduction. Mol. Plant Microbe Interact., 2013. 26(5): p. 537-45 [PMID:23301616]