PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00248-augustus-gene-0.29-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family NF-YC
Protein Properties Length: 329aa    MW: 35588.7 Da    PI: 6.0953
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00248-augustus-gene-0.29-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC543.8e-17391142398
                                          NF-YC  23 larikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrt 86 
                                                    larikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t+    ++ +v++ 
  maker-scaffold00248-augustus-gene-0.29-mRNA-1  39 LARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMSSLHLKHCVQSY 102
                                                    8*************************************************************** PP

                                          NF-YC  87 difdflvdivpr 98 
                                                    ++fdfl ++v r
  maker-scaffold00248-augustus-gene-0.29-mRNA-1 103 TVFDFLKEVVSR 114
                                                    *******99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008089.1E-173999IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.103.2E-2339113IPR009072Histone-fold
SuperFamilySSF471132.1E-1846115IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MRKKLDTRFP AFKILALGLN QLVGVSALWV LWVVLIWGLA RIKKIMQADE DVGKIALAVP  60
VLVSKALELF LQDLCDRTYE ITLQRGAKTM SSLHLKHCVQ SYTVFDFLKE VVSRVPDYSH  120
GHSDAGGEDR AISKRRKAAG DECNDSDEEL KKSKMHEMSH AHASSSGRGR GRGRGRGRGR  180
GRGTIEREAH HIDTGSDPCT SLQQGNKHNQ NPDTLMDNGS EAKELSKENI ATTDGANTAA  240
RSFDLNANVD DNEDTKAAAA AAATAAAAAA AAAAAAAPAS SAGPTTETRH EEYPGWSLSD  300
VDKMAIDPLQ LAHLSKRLDE EDEDYDEEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A1e-16401001575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171181RGRGRGRGRGR
2173182RGRGRGRGRG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023884150.11e-171dr1-associated corepressor homolog
TrEMBLA0A2N9IIF81e-141A0A2N9IIF8_FAGSY; Uncharacterized protein
STRINGXP_006471322.11e-126(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.11e-69nuclear factor Y, subunit C11