PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00253-augustus-gene-0.34-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 248aa    MW: 28261.1 Da    PI: 9.1336
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00253-augustus-gene-0.34-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.94e-171561248
                                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   g+WT+eEd+ l d++k +G + W  +a++ g++R++++c++rw++yl
  maker-scaffold00253-augustus-gene-0.34-mRNA-1 15 GPWTAEEDKMLTDYIKIHGERKWCNVAKKAGLKRCGNSCRLRWLNYL 61
                                                   89*******************************************97 PP
2Myb_DNA-binding49.41e-1567112148
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    rg+ ++ E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  maker-scaffold00253-augustus-gene-0.34-mRNA-1  67 RGNISPAEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTVL 112
                                                    7899******************.*********.************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.616961IPR017930Myb domain
SuperFamilySSF466891.21E-2812108IPR009057Homeodomain-like
SMARTSM007174.3E-151363IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-241568IPR009057Homeodomain-like
PfamPF002495.6E-151561IPR001005SANT/Myb domain
CDDcd001672.73E-121661No hitNo description
PROSITE profilePS5129425.89562116IPR017930Myb domain
SMARTSM007178.1E-1666114IPR001005SANT/Myb domain
PfamPF002492.2E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-2569117IPR009057Homeodomain-like
CDDcd001677.49E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGRRPRCTKV EMNNGPWTAE EDKMLTDYIK IHGERKWCNV AKKAGLKRCG NSCRLRWLNY  60
LRPDIKRGNI SPAEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT VLRKKLINGK  120
QHMQNTIHRP SNEITSSTTS VSNGAKTNAG KCKKIFETSQ SHELETFGSN ALEEPLKEGC  180
FVNDNVVNES KSKEDCSQNF SSSSNYMDEL LMSGVSGSDF WKLCMFYDNI VARCNNGSTN  240
DLLDKHLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-291111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4346499e-46AB434649.1 Fagus crenata FcMYB303A1, FcMYB303A2 genes for transcription factor MYB303A1, transcription factor MYB303A2, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879250.11e-164transcription factor MYB8-like
SwissprotQ388501e-56MYB5_ARATH; Transcription repressor MYB5
TrEMBLB5UAQ31e-107B5UAQ3_FAGCR; Transcription factor MYB303A1
STRINGVIT_04s0008g01820.t018e-71(Vitis vinifera)
STRINGXP_010047392.14e-71(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.15e-59myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]