PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00261-snap-gene-0.32-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family HD-ZIP
Protein Properties Length: 328aa    MW: 36554.6 Da    PI: 8.4965
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00261-snap-gene-0.32-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.33.6e-15158217256
                                                T--SS--HHHHHHHHHHHHHSSS--H.....HHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                                   Homeobox   2 rkRttftkeqleeLeelFeknrypsa.....eereeLAkklgLterqVkvWFqNrRakek 56 
                                                rk+ +++keq   Lee F+++++++      +++  LAk+l+L+ rqV vWFqNrRa+ k
  maker-scaffold00261-snap-gene-0.32-mRNA-1 158 RKKLRLSKEQSLLLEETFKEHNTLNPvsgifKQKLALAKQLNLSPRQVEVWFQNRRARTK 217
                                                788899**************9999975566679999**********************98 PP
2HD-ZIP_I/II117.86.2e-38158252191
                                HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.....erKvelareLglqprqvavWFqnrRARtktkqlEkdy 63 
                                                +kk+rlskeq+ lLEe+F+e+++L+p     ++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+
  maker-scaffold00261-snap-gene-0.32-mRNA-1 158 RKKLRLSKEQSLLLEETFKEHNTLNPvsgifKQKLALAKQLNLSPRQVEVWFQNRRARTKLKQTEVDC 225
                                                69***********************97777789*********************************** PP

                                HD-ZIP_I/II  64 eaLkraydalkeenerLekeveeLreel 91 
                                                e+Lkr++++l++en+rL+kev+eLr +l
  maker-scaffold00261-snap-gene-0.32-mRNA-1 226 EYLKRCCENLTDENRRLQKEVQELR-AL 252
                                                ************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046184.5E-2911128IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.607.4E-16138217IPR009057Homeodomain-like
SuperFamilySSF466895.85E-16145220IPR009057Homeodomain-like
PROSITE profilePS5007114.771154219IPR001356Homeobox domain
SMARTSM003891.0E-11156223IPR001356Homeobox domain
CDDcd000867.06E-13158220No hitNo description
PfamPF000461.5E-12158217IPR001356Homeobox domain
PROSITE patternPS000270194217IPR017970Homeobox, conserved site
PfamPF021832.9E-11219253IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.9E-27219262IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGEKGSSLEL GLGLSLSLGF GGNNSSSNNN NNKNNNNDSH HQPSSKMNLM HKPPPQLVQN  60
HNQKTPWNEM FQFPAERNQD TRSFLRGIDV NRLPASSTVD YNCEDENGVS SPNSTISSSI  120
SGKRSEREAN NGDENDAERA SCSRGSDDED GGGGDTSRKK LRLSKEQSLL LEETFKEHNT  180
LNPVSGIFKQ KLALAKQLNL SPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCENLTDENR  240
RLQKEVQELR ALKLSPQLYM HMNPPTTLTM CPSCERVNVS SSSSSSMVAP TGPTRHPQGP  300
NVQRPIPINP WATLPIHHRP LDAPASRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1156162SRKKLRL
2211219RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018854401.11e-147PREDICTED: homeobox-leucine zipper protein HAT3
SwissprotP466021e-107HAT3_ARATH; Homeobox-leucine zipper protein HAT3
TrEMBLA0A2N9EHM51e-154A0A2N9EHM5_FAGSY; Uncharacterized protein
STRINGXP_006464444.11e-137(Citrus sinensis)
STRINGXP_006445396.11e-137(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF123934105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.13e-78homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zou LJ, et al.
    Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus.
    Plant Cell Physiol., 2016. 57(9): p. 1879-89
    [PMID:27328697]
  3. Caggiano MP, et al.
    Cell type boundaries organize plant development.
    Elife, 2018.
    [PMID:28895530]