PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00270-augustus-gene-0.24-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 457aa    MW: 48769 Da    PI: 8.1377
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00270-augustus-gene-0.24-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH253.4e-083974361255
                                                    HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                    RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  maker-scaffold00270-augustus-gene-0.24-mRNA-1 397 RRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 436
                                                    9*****************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.839385435IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-9392441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-11397451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5397436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-8397440No hitNo description
Gene3DG3DSA:4.10.280.101.7E-11398451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 457 aa     Download sequence    Send to blast
MYPSSSPSSS SQKLMGPTPP TTTTGLTRYG SAPGSLLTTA VDSIIGQTGR EFSALRSTQQ  60
PPPPPPPSFM APQQQQHHHH NSHSHHYFSS DSSSITTEST CKVNSSNDPN KDHHKGGGGG  120
GGLQRSYGLN EMPSFGDFTS NLKIGGGGGG GGGAGLSSSS SSSCSSSSSA SALVRQRSSP  180
AGFLSHLASD NGFSVTRGSG GYASQGGSNG GHGVSRLKSQ LSFTRQDSLS QISEVSEEVV  240
DGISSDNGHQ NASHSYATSS FGMDSWDNTN SIIFSAPPSK RAKNLDGDIY NCLNSLETQF  300
SLPQTTLEMA TVEKLLHIPE DSVPCKIRAK RGCATHPRSI AERVSKTSGV WSSRIPKIKS  360
YCSILVHVMN HVEFQWVLNL CPPQWGEPDM PIDLEERRTR ISGKLKKLQD LVPNMDKQTS  420
YADMLDLAVQ HIKGLQNQVQ KLHKDLDSCT CGCNQTK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023925304.10.0transcription factor bHLH128-like
TrEMBLA0A2I4E8P91e-165A0A2I4E8P9_JUGRE; transcription factor bHLH128-like isoform X1
STRINGcassava4.1_010829m1e-145(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.14e-71bHLH family protein