PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00270-augustus-gene-0.24-mRNA-2
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family bHLH
Protein Properties Length: 405aa    MW: 42791 Da    PI: 8.4083
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00270-augustus-gene-0.24-mRNA-2genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.86.3e-11339384655
                                                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                                            HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                                    +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  maker-scaffold00270-augustus-gene-0.24-mRNA-2 339 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 384
                                                    689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14336399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.34E-11337388No hitNo description
Gene3DG3DSA:4.10.280.101.2E-13338396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-13339389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-8339384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MYPSSSPSSS SQKLMGPTPP TTTTGLTRYG SAPGSLLTTA VDSIIGQTGR EFSALRSTQQ  60
PPPPPPPSFM APQQQQHHHH NSHSHHYFSS DSSSITTEST CKVNSSNDPN KDHHKGGGGG  120
GGLQRSYGLN EMPSFGDFTS NLKIGGGGGG GGGAGLSSSS SSSCSSSSSA SALVRQRSSP  180
AGFLSHLASD NGFSVTRGSG GYASQGGSNG GHGVSRLKSQ LSFTRQDSLS QISEVSEEVV  240
DGISSDNGHQ NASHSYATSS FGMDSWDNTN SIIFSAPPSK RAKNLDGDIY NCLNSLETQF  300
SLPQTTLEMA TVEKLLHIPE DSVPCKIRAK RGCATHPRSI AERERRTRIS GKLKKLQDLV  360
PNMDKQTSYA DMLDLAVQHI KGLQNQVQKL HKDLDSCTCG CNQTK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023925304.10.0transcription factor bHLH128-like
TrEMBLA0A2I4E8P90.0A0A2I4E8P9_JUGRE; transcription factor bHLH128-like isoform X1
STRINGcassava4.1_010829m1e-165(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.15e-84bHLH family protein