PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00274-snap-gene-0.59-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family B3
Protein Properties Length: 251aa    MW: 28676.9 Da    PI: 5.2126
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00274-snap-gene-0.59-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.92.7e-11149249798
                                                .-HHHHTT-EE--HHH.HTT........---....--SEEEEEETTS-EEEEEE.....EEETTEEEE CS
                                         B3   7 psdvlksgrlvlpkkfaeeh........ggkke..esktltledesgrsWevkl.iy..rkksgryvl 61 
                                                ps+ + ++r +lp   + ++        +++k    +++l++     r W +kl iy   ++ +++v 
  maker-scaffold00274-snap-gene-0.59-mRNA-1 149 PSYINGKDRASLPHGII-NYlpregftkDYIKGsiLTMKLQV---VDRLWPMKLyIYegMNQTSSCVV 212
                                                55556666666666655.444555555433333003333333...4599****944488777778*** PP

                                                -TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                                         B3  62 tkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                                ++ W+ F+++n+L+  D++vF+++ r++  l+v++f+
  maker-scaffold00274-snap-gene-0.59-mRNA-1 213 SASWSAFARENKLRLEDVCVFEVIMRDDVGLKVHIFK 249
                                                **********************998877779*99996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-10153IPR015300DNA-binding pseudobarrel domain
CDDcd100173.90E-7159No hitNo description
PROSITE profilePS508638.05181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-8253IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-13135249IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-14138248IPR015300DNA-binding pseudobarrel domain
CDDcd100176.38E-13141249No hitNo description
SMARTSM010190.004143251IPR003340B3 DNA binding domain
PROSITE profilePS508639.615143251IPR003340B3 DNA binding domain
PfamPF023627.9E-9144249IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MILPVMFIVK YGVDLSDMAF LMIPNGTTWK VKLTKRDGEV WFENGWCEFA SCHDDQLQVR  60
RLEESESDDN SVEIIDGFMP SQKTREIDGG VGTSTSWRRL KGKAVVNDEE YKALENSQEL  120
MTTNGEAEIL VRANAFKSEN PLFVVIIHPS YINGKDRASL PHGIINYLPR EGFTKDYIKG  180
SILTMKLQVV DRLWPMKLYI YEGMNQTSSC VVSASWSAFA RENKLRLEDV CVFEVIMRDD  240
VGLKVHIFKC N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1411125117143B3 domain-containing transcription factor VRN1
4i1k_B3e-1411125117143B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023875911.14e-81B3 domain-containing transcription factor VRN1-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-15B3 family protein