PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00298-augustus-gene-1.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family C2H2
Protein Properties Length: 292aa    MW: 32219.7 Da    PI: 8.2453
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00298-augustus-gene-1.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.00049226248223
                                                    EETTTTEEESSHHHHHHHHHH.T CS
                                        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                                    +Cp Cg  Fs+  +L+ H  + H
  maker-scaffold00298-augustus-gene-1.15-mRNA-1 226 ECPQCGAKFSSVTTLVDHVEKvH 248
                                                    5*****************99888 PP
2zf-C2H217.89.1e-06264286223
                                                    EETTTTEEESSHHHHHHHHHH.T CS
                                        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                                                    +Cp+C++ F+++ +L++H  + H
  maker-scaffold00298-augustus-gene-1.15-mRNA-1 264 VCPKCSRGFRDPVSLVQHVERdH 286
                                                    7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.27E-13650No hitNo description
PROSITE profilePS510397.9011056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.105.4E-111153IPR000058Zinc finger, AN1-type
SMARTSM001544.6E-51352IPR000058Zinc finger, AN1-type
PfamPF014286.2E-141351IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.2E-1090148IPR000058Zinc finger, AN1-type
SuperFamilySSF1183102.16E-893144No hitNo description
PROSITE profilePS510397.94198145IPR000058Zinc finger, AN1-type
SMARTSM0035522099129IPR015880Zinc finger, C2H2-like
SMARTSM001540.036101142IPR000058Zinc finger, AN1-type
PfamPF014281.4E-7101141IPR000058Zinc finger, AN1-type
SMARTSM003550.042225248IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.598225255IPR007087Zinc finger, C2H2
PfamPF138944.0E-4226248No hitNo description
PROSITE patternPS000280227248IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.7E-4229248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003557.2263286IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808263291IPR007087Zinc finger, C2H2
PROSITE patternPS000280265286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSFDDCKL IDFLPFTCDR CRQVFCLEHR SYIKHSCPNA DRQDVTVVIC  60
PLCAKGVRLI PDEDPNITWE THVNTECDPS NYEKVTKKKK CPVPGCKDIL TFSNTIKCRD  120
CLVDHCLKHR FGPDHKCPGP KKSEAVFPFM GLLSRSRKEE SKPNRAPTSS SSTWATSFLN  180
AASTVRASAE ASMSKLSTEI SQKLQIAKDG MGQSSSSSSG GIGQEECPQC GAKFSSVTTL  240
VDHVEKVHER NGNRPGVKKV TIDVCPKCSR GFRDPVSLVQ HVERDHGGTS RT
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023916320.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
SwissprotQ8VZ421e-134SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11
TrEMBLA0A2N9G7J20.0A0A2N9G7J2_FAGSY; Uncharacterized protein
STRINGXP_010102532.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58643351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-132C2H2 family protein