PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00323-augustus-gene-1.15-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family CPP
Protein Properties Length: 495aa    MW: 53734.9 Da    PI: 8.127
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00323-augustus-gene-1.15-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.82.6e-142261242
                                            TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                                                   ++k+CnC+ s+Clk+YCeCfaag +C++ C+C +C+N+ e+
  maker-scaffold00323-augustus-gene-1.15-mRNA-1 22 KQKQCNCRSSRCLKLYCECFAAGIYCDN-CNCINCQNNVEN 61
                                                   89*************************9.********9875 PP
2TCR50.54.1e-16106145140
                                            TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                                                    k++kgC+Ckks ClkkYCeCf+a++ Cse+CkC +CkN e
  maker-scaffold00323-augustus-gene-1.15-mRNA-1 106 KHSKGCQCKKSGCLKKYCECFQANVLCSENCKCMECKNFE 145
                                                    589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.5E-182161IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.17222146IPR005172CRC domain
PfamPF036382.1E-112358IPR005172CRC domain
SMARTSM011146.0E-18106147IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-12109144IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
KQESPRPKPR ANAEAKDSTP KKQKQCNCRS SRCLKLYCEC FAAGIYCDNC NCINCQNNVE  60
NEAARQEAVG VTLERNPNAF RPKIASSPHE PRDSREDVAE VQVVGKHSKG CQCKKSGCLK  120
KYCECFQANV LCSENCKCME CKNFEGSQER RDLIHEDHNA MANIQQAKLA NAAISGAIGS  180
FGYGTPLVPR KRKSHELCQR ENHLRASSIP DSCTANAAVS GSSNFKYRST LANILQPQDM  240
KDLCSHLVEL SAEVTMTRTG NSGKLDRETE RKNIEISTAL STQENEVVEN GNGSQKAIPG  300
NHLSRNLVDR DGSTDSGSDG IDRDSGRPMS PGTLALMCDE QDMMFMDGGS PKGVLGDGQN  360
TSQKSSNGHG SELYAEQERL VLARLRDYLN RIIACGSIRE TMPSPVAKNG TGNQQKLAEN  420
GNVKSGSETR SHKEAYGNGI TKSPVPASAE ASSRAHPVTS DKKDMSSKVG LPNGNGEKIK  480
PNTDRVVATE RNSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-31141552132Protein lin-54 homolog
5fd3_B1e-31141552132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190194KRKSH
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023914139.10.0protein tesmin/TSO1-like CXC 5
SwissprotQ9SZD11e-131TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2N9J2J00.0A0A2N9J2J0_FAGSY; Uncharacterized protein
STRINGEOY297030.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-112Tesmin/TSO1-like CXC domain-containing protein