PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID maker-scaffold00328-augustus-gene-0.41-mRNA-1
Organism
Castanea mollissima
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Fagaceae; Castanea
Family MYB
Protein Properties Length: 254aa    MW: 29204.6 Da    PI: 7.2346
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
maker-scaffold00328-augustus-gene-0.41-mRNA-1genomeTHGPView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.35.6e-161461148
                                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                                   +g+W++eEd +l  +v+++G  +W+  ++  g+ R++k+c++rw +yl
  maker-scaffold00328-augustus-gene-0.41-mRNA-1 14 KGAWSPEEDNKLRAYVQRYGHWNWRELPKFAGLSRCGKSCRLRWMNYL 61
                                                   79******************99************************97 PP
2Myb_DNA-binding59.67.1e-1967112148
                                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                                    rg+ T+eEde++++ +++lG++ W++Ia++++ gRt++++k++w+++l
  maker-scaffold00328-augustus-gene-0.41-mRNA-1  67 RGKYTKEEDEKIIKWHQELGNK-WSKIAAKLP-GRTDNEIKNHWHTHL 112
                                                    89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.196961IPR017930Myb domain
SuperFamilySSF466891.48E-3011108IPR009057Homeodomain-like
SMARTSM007171.0E-121363IPR001005SANT/Myb domain
PfamPF002491.1E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-231568IPR009057Homeodomain-like
CDDcd001678.41E-101661No hitNo description
PROSITE profilePS5129427.91862116IPR017930Myb domain
SMARTSM007172.8E-1766114IPR001005SANT/Myb domain
PfamPF002493.7E-1767112IPR001005SANT/Myb domain
CDDcd001675.00E-1369112No hitNo description
Gene3DG3DSA:1.10.10.609.7E-2769115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVKAPYYDKN GVKKGAWSPE EDNKLRAYVQ RYGHWNWREL PKFAGLSRCG KSCRLRWMNY  60
LRPDVKRGKY TKEEDEKIIK WHQELGNKWS KIAAKLPGRT DNEIKNHWHT HLKKRAKENQ  120
VSSEVKEHPS DVSQCETISR NRDSEVESVP ANAPSRHILE SSPLSPETSS SYFSTLSSHL  180
QAPPPPSGIN QVSEDGVASS EAFDEFIGDF WTEPFVADNT FFQNSFPLSL LNRGLISPCA  240
SYYDDDIDLF YQVM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023872104.11e-172transcription factor MYB15-like
TrEMBLA0A2N9IZQ91e-143A0A2N9IZQ9_FAGSY; Uncharacterized protein
STRINGPOPTR_0019s14130.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-58myb domain protein 63